Construct: ORF ccsbBroad304_15506

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF013539.1_s304c1, BRDN0000399369
Derived from:
ccsbBroadEn_15506
DNA Barcode:
None
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
NFYB (4801)

Vector Information:

Vector Backbone:
pLX_304
Pol II Cassette 1:
PGK-BlastR
Pol II Cassette 2:
CMV-ccsbBroad304_15506
Selection Marker:
BlastR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 4801 NFYB nuclear transcription facto... NM_006166.4 99.8% 99.5% 87A>G
2 human 4801 NFYB nuclear transcription facto... XM_024448984.1 99.8% 99.5% 87A>G
3 human 4801 NFYB nuclear transcription facto... XM_024448985.1 99.8% 99.5% 87A>G
4 human 4801 NFYB nuclear transcription facto... XM_005268908.4 99% 98% 4_5insC;6_9delCCTG;90A>G
5 human 4801 NFYB nuclear transcription facto... XM_005268909.4 99% 98% 4_5insC;6_9delCCTG;90A>G
6 human 4801 NFYB nuclear transcription facto... XM_005268910.4 99% 98% 4_5insC;6_9delCCTG;90A>G
7 mouse 18045 Nfyb nuclear transcription facto... NM_010914.2 88.7% 98.5% (many diffs)
8 mouse 18045 Nfyb nuclear transcription facto... XM_011243379.2 88.7% 98.5% (many diffs)
9 mouse 18045 Nfyb nuclear transcription facto... XM_011243380.2 55.5% 61.8% (many diffs)
10 mouse 18045 Nfyb nuclear transcription facto... XM_011243381.2 55.5% 61.8% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
687
ORF length:
621
Sequence:
1ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag
61ttggcatgac aatggatggt gacagttcta caacagatgc ttctcaacta ggaatctctg
121cagactatat tggaggaagt cattatgtta tgcagcctca tgatgatact gaggacagca
181tgaatgatca tgaagacaca aatggttcaa aagaaagttt cagagaacaa gatatatatc
241ttccaatagc aaacgtggct aggataatga aaaatgccat acctcaaacg ggaaagattg
301caaaagatgc caaagaatgt gttcaagaat gtgtaagtga gttcatcagt tttataacat
361ctgaagcaag tgaaaggtgc catcaagaga aacggaaaac aatcaatgga gaagatattc
421tctttgctat gtctacttta ggctttgaca gttatgtgga acctctgaaa ttataccttc
481agaaattcag agaggctatg aaaggagaaa agggaattgg tggagcagtc acagctacag
541atggactaag tgaagagctt acagaggagg catttactaa ccagttacca gctggcttaa
601taaccacaga cggtcaacaa caaaatgtta tggtttacac aacatcatat caacagattt
661ctggtgttca gcaaattcag ttttcatnnc caactttctt gtacaaagtg gttggtaagc
721ctatccctaa ccctctcctc ggtctcgatt ctacgtagta atgagctagc gctaaccggt
781ggcgcgttaa gtcgacaatc aacctctgga tta

Download FASTA (ORF) (Full)