Construct: ORF ccsbBroad304_15583
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF007552.1_s304c1, BRDN0000404459
- Derived from:
- ccsbBroadEn_15583
- DNA Barcode:
- None
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- CLIP1 (6249)
Vector Information:
- Vector Backbone:
- pLX_304
- Pol II Cassette 1:
- PGK-BlastR
- Pol II Cassette 2:
- CMV-ccsbBroad304_15583
- Selection Marker:
- BlastR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 6249 | CLIP1 | CAP-Gly domain containing l... | XM_017019792.2 | 25.4% | 24.8% | (many diffs) |
| 2 | human | 6249 | CLIP1 | CAP-Gly domain containing l... | XM_017019791.2 | 24.8% | 24.2% | (many diffs) |
| 3 | human | 6249 | CLIP1 | CAP-Gly domain containing l... | NM_198240.2 | 24.7% | 24.2% | (many diffs) |
| 4 | human | 6249 | CLIP1 | CAP-Gly domain containing l... | XM_017019790.1 | 24.7% | 24.2% | (many diffs) |
| 5 | human | 6249 | CLIP1 | CAP-Gly domain containing l... | XM_017019788.2 | 24.7% | 24.1% | (many diffs) |
| 6 | human | 6249 | CLIP1 | CAP-Gly domain containing l... | XM_017019789.1 | 24.7% | 24.1% | (many diffs) |
| 7 | human | 6249 | CLIP1 | CAP-Gly domain containing l... | XM_017019787.2 | 24.6% | 24% | (many diffs) |
| 8 | human | 6249 | CLIP1 | CAP-Gly domain containing l... | NM_002956.2 | 24.1% | 23.6% | (many diffs) |
| 9 | human | 6249 | CLIP1 | CAP-Gly domain containing l... | XM_017019786.1 | 24.1% | 23.6% | (many diffs) |
| 10 | human | 6249 | CLIP1 | CAP-Gly domain containing l... | XM_006719552.4 | 24.1% | 23.5% | (many diffs) |
| 11 | human | 6249 | CLIP1 | CAP-Gly domain containing l... | NM_001247997.1 | 23.9% | 23.4% | (many diffs) |
| 12 | human | 6249 | CLIP1 | CAP-Gly domain containing l... | XM_005253593.3 | 23.9% | 23.4% | (many diffs) |
| 13 | mouse | 56430 | Clip1 | CAP-GLY domain containing l... | XM_017321032.1 | 27.2% | 28.1% | (many diffs) |
| 14 | mouse | 56430 | Clip1 | CAP-GLY domain containing l... | XM_017321031.1 | 26.2% | 27.1% | (many diffs) |
| 15 | mouse | 56430 | Clip1 | CAP-GLY domain containing l... | XM_017321030.1 | 23.4% | 24.2% | (many diffs) |
| 16 | mouse | 56430 | Clip1 | CAP-GLY domain containing l... | XM_017321029.1 | 23.3% | 24.1% | (many diffs) |
| 17 | mouse | 56430 | Clip1 | CAP-GLY domain containing l... | XM_017321028.1 | 22.8% | 23.5% | (many diffs) |
| 18 | mouse | 56430 | Clip1 | CAP-GLY domain containing l... | NM_001291229.1 | 22.7% | 23.5% | (many diffs) |
| 19 | mouse | 56430 | Clip1 | CAP-GLY domain containing l... | NM_001347468.1 | 22.7% | 23.4% | (many diffs) |
| 20 | mouse | 56430 | Clip1 | CAP-GLY domain containing l... | XM_006530423.3 | 22.6% | 23.3% | (many diffs) |
| 21 | mouse | 56430 | Clip1 | CAP-GLY domain containing l... | XM_017321027.1 | 22.6% | 23.3% | (many diffs) |
| 22 | mouse | 56430 | Clip1 | CAP-GLY domain containing l... | XM_017321026.1 | 22.5% | 23.2% | (many diffs) |
| 23 | mouse | 56430 | Clip1 | CAP-GLY domain containing l... | XM_017321025.1 | 21.5% | 22.3% | (many diffs) |
| 24 | mouse | 56430 | Clip1 | CAP-GLY domain containing l... | NM_019765.5 | 21.5% | 22.2% | (many diffs) |
| 25 | mouse | 56430 | Clip1 | CAP-GLY domain containing l... | XM_017321024.1 | 21.4% | 22.1% | (many diffs) |
| 26 | mouse | 56430 | Clip1 | CAP-GLY domain containing l... | XM_006530422.3 | 21% | 21.7% | (many diffs) |
| 27 | mouse | 56430 | Clip1 | CAP-GLY domain containing l... | XM_017321023.1 | 20.9% | 21.6% | (many diffs) |
| 28 | mouse | 56430 | Clip1 | CAP-GLY domain containing l... | XM_006530421.3 | 20.8% | 21.5% | (many diffs) |
| 29 | mouse | 56430 | Clip1 | CAP-GLY domain containing l... | XM_017321022.1 | 20.8% | 21.5% | (many diffs) |
| 30 | mouse | 56430 | Clip1 | CAP-GLY domain containing l... | XM_006530420.3 | 20.7% | 21.4% | (many diffs) |
| 31 | mouse | 56430 | Clip1 | CAP-GLY domain containing l... | XM_011248234.2 | 15.1% | 15.6% | (many diffs) |
| 32 | mouse | 56430 | Clip1 | CAP-GLY domain containing l... | XM_017321020.1 | 14.4% | 14.9% | (many diffs) |
| 33 | mouse | 56430 | Clip1 | CAP-GLY domain containing l... | XM_006530419.3 | 14.4% | 14.8% | (many diffs) |
| 34 | mouse | 56430 | Clip1 | CAP-GLY domain containing l... | XM_006530418.3 | 14.3% | 14.8% | (many diffs) |
| 35 | mouse | 56430 | Clip1 | CAP-GLY domain containing l... | XM_006530417.3 | 14.1% | 14.5% | (many diffs) |
| 36 | mouse | 56430 | Clip1 | CAP-GLY domain containing l... | XM_006530416.3 | 14% | 14.5% | (many diffs) |
| 37 | mouse | 56430 | Clip1 | CAP-GLY domain containing l... | XM_017321019.1 | 13.9% | 14.3% | (many diffs) |
| 38 | mouse | 56430 | Clip1 | CAP-GLY domain containing l... | XM_006530415.3 | 13.9% | 14.3% | (many diffs) |
| 39 | mouse | 56430 | Clip1 | CAP-GLY domain containing l... | XM_006530414.3 | 13.8% | 14.3% | (many diffs) |
| 40 | mouse | 56430 | Clip1 | CAP-GLY domain containing l... | XM_006530413.3 | 13.8% | 14.2% | (many diffs) |
| 41 | mouse | 56430 | Clip1 | CAP-GLY domain containing l... | XM_006530412.3 | 13.6% | 14.1% | (many diffs) |
| 42 | mouse | 56430 | Clip1 | CAP-GLY domain containing l... | XM_006530411.3 | 13.6% | 14.1% | (many diffs) |
| 43 | mouse | 56430 | Clip1 | CAP-GLY domain containing l... | XM_006530410.3 | 13.6% | 14.1% | (many diffs) |
| 44 | mouse | 56430 | Clip1 | CAP-GLY domain containing l... | XM_006530409.3 | 13.6% | 14% | (many diffs) |
| 45 | mouse | 56430 | Clip1 | CAP-GLY domain containing l... | XM_006530407.3 | 13.6% | 14% | (many diffs) |
| 46 | mouse | 56430 | Clip1 | CAP-GLY domain containing l... | XM_011248233.2 | 13.6% | 14% | (many diffs) |
| 47 | mouse | 56430 | Clip1 | CAP-GLY domain containing l... | XM_017321017.1 | 13.6% | 14% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 1116
- ORF length:
- 1050
- Sequence:
-
1 ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag 61 ttggcatgag tatgctaaag ccaagtgggc ttaaggcccc caccaagatc ctgaagcctg 121 gaagcacagc tctgaagaca cctacggctg ttgtagctcc agtagaaaaa accatatcca 181 gtgaaaaagc atcaagcact ccatcatctg agactcagga ggaatttgtg gatgactttc 241 gagttgggga gcgagtttgg gtgaatggaa ataagcctgg atttatccag tttcttggag 301 aaacccagtt tgcaccaggc cagtgggctg gaattgtttt agatgaaccc ataggcaaga 361 acgatggttc ggtggcagga gttcggtatt tccagtgtga acctttaaag ggcatattta 421 cccgaccttc aaagttaaca aggaaggtgc aagcagaaga tgaagctaat ggcctgcaga 481 caacgcccgc ctcccgagct acttcaccgc tgtgcacttc tacggccagc atggtgtctt 541 cctccccctc caccccttca aacatccctc agaaaccatc acagccagca gcaaaggaac 601 cttcagctac gcctccgatc agcaacctta caaaaactgc cagtgaatct atctccaacc 661 tttcagaggc tggctcaatc aagaaaggag aaagagagct caaaatcgga gacagagtat 721 tggttggtgg cactaaggct ggtgtagtcc ggtttcttgg ggagaccgac tttgccaagg 781 gggagtggtg tggcgtggag ttagatgagc cacttgggaa gaatgatggc gctgttgctg 841 gaacaaggta ttttcagtgt caacccaaat atggcttgtt cgctcctgtc cacaaagtta 901 ccaagattgg cttcccttcc actacaccag ccaaagccaa ggccaacgca gtgaggcgag 961 tgatggcgac cacgtccgcc agcctgaagc gcagcccttc tgcctcttcc ctcagctcca 1021 tgagctcagt ggcctcctct gtgagcagca ggcccagtcg gacaggacta gtaaggcccc 1081 tttctcacta cctgcctcca cttcccaggc aggattnncc aactttcttg tacaaagtgg 1141 ttggtaagcc tatccctaac cctctcctcg gtctcgattc tacgtagtaa tgagctagcg 1201 ctaaccggtg gcgcgttaag tcgacaatca acctctggat ta