Construct: ORF ccsbBroad304_15800

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF001519.1_s304c1, BRDN0000407087
Derived from:
ccsbBroadEn_15800
DNA Barcode:
None
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
C11orf54 (28970)

Vector Information:

Vector Backbone:
pLX_304
Pol II Cassette 1:
PGK-BlastR
Pol II Cassette 2:
CMV-ccsbBroad304_15800
Selection Marker:
BlastR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 28970 C11orf54 chromosome 11 open reading ... NM_001369406.2 99.8% 100% 303A>G
2 human 28970 C11orf54 chromosome 11 open reading ... NM_001286071.1 71.3% 60.4% (many diffs)
3 human 28970 C11orf54 chromosome 11 open reading ... NM_001351992.2 71.3% 60.4% (many diffs)
4 human 28970 C11orf54 chromosome 11 open reading ... XM_017017617.1 71.3% 60.4% (many diffs)
5 human 28970 C11orf54 chromosome 11 open reading ... NM_001286070.1 68.8% 68.9% 1_276del;579A>G
6 human 28970 C11orf54 chromosome 11 open reading ... NM_001351990.2 68.8% 68.9% 1_276del;579A>G
7 human 28970 C11orf54 chromosome 11 open reading ... NM_001286067.2 64.6% 64.7% 1_333del;636A>G
8 human 28970 C11orf54 chromosome 11 open reading ... NM_001286068.2 64.6% 64.7% 1_333del;636A>G
9 human 28970 C11orf54 chromosome 11 open reading ... NM_001286069.2 64.6% 64.7% 1_333del;636A>G
10 human 28970 C11orf54 chromosome 11 open reading ... NM_001351985.2 64.6% 64.7% 1_333del;636A>G
11 human 28970 C11orf54 chromosome 11 open reading ... NM_001351986.2 64.6% 64.7% 1_333del;636A>G
12 human 28970 C11orf54 chromosome 11 open reading ... NM_001351987.2 64.6% 64.7% 1_333del;636A>G
13 human 28970 C11orf54 chromosome 11 open reading ... NM_001351988.2 64.6% 64.7% 1_333del;636A>G
14 human 28970 C11orf54 chromosome 11 open reading ... NM_001351989.2 64.6% 64.7% 1_333del;636A>G
15 human 28970 C11orf54 chromosome 11 open reading ... XM_011542781.2 64.6% 64.7% 1_333del;636A>G
16 human 28970 C11orf54 chromosome 11 open reading ... XM_011542782.3 64.6% 64.7% 1_333del;636A>G
17 human 28970 C11orf54 chromosome 11 open reading ... NM_001351993.2 52% 52% 1_276del;449_450ins150
18 human 28970 C11orf54 chromosome 11 open reading ... NM_001351991.2 48.8% 48.8% 1_333del;506_507ins150
19 human 28970 C11orf54 chromosome 11 open reading ... NM_014039.4 48.8% 48.8% 1_333del;506_507ins150
20 mouse 70984 4931406C07Rik RIKEN cDNA 4931406C07 gene XM_030244585.1 84.3% 86.2% (many diffs)
21 mouse 70984 4931406C07Rik RIKEN cDNA 4931406C07 gene NM_001359258.1 60.9% 62.4% (many diffs)
22 mouse 70984 4931406C07Rik RIKEN cDNA 4931406C07 gene NM_001199484.1 54.6% 55.8% (many diffs)
23 mouse 70984 4931406C07Rik RIKEN cDNA 4931406C07 gene NM_001199485.1 54.6% 55.8% (many diffs)
24 mouse 70984 4931406C07Rik RIKEN cDNA 4931406C07 gene NM_133732.3 54.6% 55.8% (many diffs)
25 mouse 70984 4931406C07Rik RIKEN cDNA 4931406C07 gene XM_006510596.2 54.6% 55.8% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
678
ORF length:
612
Sequence:
1ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag
61ttggcatgcc agttattcag acagaaagtg aacacaagcc tcctgtaaat ggaagttact
121ttgcccatgt gaaccctgca gatggagggt gcctactgga gaaatacagt gagaaatgtc
181atgattttca gtgtgcatta ctggctaatc tttttgccag tgaaggccaa cctggcaagg
241taattgaggt gaaagccaaa agaagaactg gaccacttaa ctttgtgact tgtatgagag
301agaccctgga aaaacattat ggaaataagc ctataggaat gggaggtact ttcataattc
361agaaggggaa agtgaagtct cacattatgc ctgcagaatt ttcttcctgc cccttgaact
421ctgatgaaga agtgaataaa tggttgcatt tttatgaaat gaaagctcct ttggtttgtc
481taccagtttt tgtctccaga gacccagggt ttgatttgcg actggagcac actcattttt
541ttagtcgtca tggagaaggt ggacactacc attatgacac tactccagat atagtggaat
601atcttggata cttcttacct gcagagtttc tctatcgcat tgatcaacca aaagagacgc
661attcaattgg gcgagattnn ccaactttct tgtacaaagt ggttggtaag cctatcccta
721accctctcct cggtctcgat tctacgtagt aatgagctag cgctaaccgg tggcgcgtta
781agtcgacaat caacctctgg atta

Download FASTA (ORF) (Full)