Construct: ORF ccsbBroad304_15872

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF006045.1_s304c1, BRDN0000408785
Derived from:
ccsbBroadEn_15872
DNA Barcode:
None
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
ESRP1 (54845)

Vector Information:

Vector Backbone:
pLX_304
Pol II Cassette 1:
PGK-BlastR
Pol II Cassette 2:
CMV-ccsbBroad304_15872
Selection Marker:
BlastR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 54845 ESRP1 epithelial splicing regulat... NM_001034915.3 99.8% 99.8% 1452G>A;1788T>C;1946T>C
2 human 54845 ESRP1 epithelial splicing regulat... NM_017697.4 99.2% 99.2% (many diffs)
3 human 54845 ESRP1 epithelial splicing regulat... NM_001122826.2 96.7% 96.3% (many diffs)
4 human 54845 ESRP1 epithelial splicing regulat... XM_005250991.3 96.1% 95.7% (many diffs)
5 human 54845 ESRP1 epithelial splicing regulat... XM_005250992.3 91.2% 89.5% (many diffs)
6 human 54845 ESRP1 epithelial splicing regulat... NM_001122827.2 89% 89% (many diffs)
7 human 54845 ESRP1 epithelial splicing regulat... NM_001122825.2 88.5% 88.5% (many diffs)
8 mouse 207920 Esrp1 epithelial splicing regulat... XM_006537715.1 90.5% 97% (many diffs)
9 mouse 207920 Esrp1 epithelial splicing regulat... NM_194055.3 90% 96.4% (many diffs)
10 mouse 207920 Esrp1 epithelial splicing regulat... NM_001290383.1 89.9% 96.3% (many diffs)
11 mouse 207920 Esrp1 epithelial splicing regulat... XM_006537716.1 87% 93% (many diffs)
12 mouse 207920 Esrp1 epithelial splicing regulat... XM_006537717.1 82.2% 87% (many diffs)
13 mouse 207920 Esrp1 epithelial splicing regulat... NM_001347052.1 80% 86.5% (many diffs)
14 mouse 207920 Esrp1 epithelial splicing regulat... XM_006537718.1 79.5% 86% (many diffs)
15 mouse 207920 Esrp1 epithelial splicing regulat... XM_006537721.3 65.5% 69.7% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
2100
ORF length:
2031
Sequence:
1ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag
61ttggcaccat gacggcctct ccggattact tggtggtgct ttttgggatc actgctgggg
121ccaccggggc caagctaggc tcggatgaga aggagttgat cctgctgttc tggaaagtcg
181tggatctggc caacaagaag gtgggacagt tgcacgaagt gctagttaga ccggatcagt
241tggaactgac ggaggactgc aaagaagaaa ctaaaataga cgtcgaaagc ctgtcctcgg
301cgtcgcagct ggaccaagcc ctccgacagt ttaaccagtc agtgagcaat gaactgaata
361ttggagtagg gacttccttc tgtctctgta ctgatgggca gcttcatgtc aggcaaatcc
421tgcatcctga ggcttccaag aagaatgtac tattacctga atgcttctat tccttttttg
481atcttcgaaa agaattcaag aaatgttgcc ctggttcacc tgatattgac aaactggacg
541ttgccacaat gacagagtat ttaaattttg agaagagtag ttcagtctct cgatatggag
601cctctcaagt tgaagatatg gggaatataa ttttagcaat gatttcagag ccttataatc
661acaggttttc agatccagag agagtgaatt acaagtttga aagtggaact tgcagcaaga
721tggaacttat tgatgataac accgtagtca gggcacgagg tttaccatgg cagtcttcag
781atcaagatat tgcaagattc ttcaaaggac tcaatattgc caagggaggt gcagcacttt
841gtctgaatgc tcagggtcga aggaacggag aagctctggt taggtttgta agtgaggagc
901accgagacct agcactacag aggcacaaac atcacatggg gacccggtat attgaggttt
961acaaagcaac aggtgaagat ttccttaaaa ttgctggtgg tacttccaat gaggtagccc
1021agtttctctc caaggaaaat caagtcattg tccgcatgcg ggggctccct ttcacggcca
1081cagctgaaga agtggtggcc ttctttggac agcattgccc tattactggg ggaaaggaag
1141gcatcctctt tgtcacctac ccagatggta ggccaacagg ggacgctttt gtcctctttg
1201cctgtgagga atatgcacag aatgcgttga ggaagcataa agacttgttg ggtaaaagat
1261acattgaact cttcaggagc acagcagctg aagttcagca ggtgctgaat cgattctcct
1321cggcccctct cattccactt ccaacccctc ccattattcc agtactacct cagcaatttg
1381tgccccctac aaatgttaga gactgtatac gccttcgagg tcttccctat gcagccacaa
1441ttgaggacat cctggatttc ctgggggagt tcgccacaga tattcgtact catggggttc
1501acatggtttt gaatcaccaa ggccgcccat caggagatgc ctttatccag atgaagtctg
1561cggacagagc atttatggct gcacagaagt gtcataaaaa aaacatgaag gacagatatg
1621ttgaagtctt tcagtgttca gctgaggaga tgaactttgt gttaatgggg ggcactttaa
1681atcgaaatgg cttatcccca ccgccatgcc tgtctcctcc ctcctacaca tttccagctc
1741ctgctgcagt tattcctaca gaagctgcca tttaccagcc ctctgtgatt ttgaatccac
1801gagcactgca gccctccaca gcgtactacc cagcaggcac tcagctcttc atgaactaca
1861cagcgtacta tcccagcccc ccaggttcgc ctaatagtct tggctacttc cctacagctg
1921ctaatcttag cggtgtccct ccacagcctg gcacggtggt cagaatgcag ggcctggcct
1981acaatactgg agttaaggaa attcttaact tctcccaagg ttaccagtat gcaaccgagg
2041atggacttat acacacaaat gaccaggcca ggactctacc caaagaatgg gtttgtattt
2101nnccaacttt cttgtacaaa gtggttggta agcctatccc taaccctctc ctcggtctcg
2161attctacgta gtaatgagct agcgctaacc ggtggcgcgt taagtcgaca atcaacctct
2221ggatta

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