Transcript: Human NM_017697.4

Homo sapiens epithelial splicing regulatory protein 1 (ESRP1), transcript variant 1, mRNA.

Source:
NCBI, updated 2019-07-16
Taxon:
Homo sapiens (human)
Gene:
ESRP1 (54845)
Length:
3768
CDS:
146..2191

Additional Resources:

NCBI RefSeq record:
NM_017697.4
NBCI Gene record:
ESRP1 (54845)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NM_017697.4, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000146588 CCGGTATATTGAGGTTTACAA pLKO.1 1021 CDS 100% 5.625 7.875 N ESRP1 n/a
2 TRCN0000245378 AGTAGTTCAGTCTCTCGATAT pLKO_005 653 CDS 100% 10.800 8.640 N ESRP1 n/a
3 TRCN0000147725 GCATAAAGACTTGTTGGGTAA pLKO.1 1312 CDS 100% 4.050 3.240 N ESRP1 n/a
4 TRCN0000240872 TAGCTGTGTTTATGCTATAAA pLKO_005 3297 3UTR 100% 15.000 10.500 N ESRP1 n/a
5 TRCN0000240875 ACCAAGCCCTCCGACAGTTTA pLKO_005 390 CDS 100% 13.200 9.240 N ESRP1 n/a
6 TRCN0000240874 TGGACAGCATTGCCCTATTAC pLKO_005 1183 CDS 100% 13.200 9.240 N ESRP1 n/a
7 TRCN0000240873 GTTGCACGAAGTGCTAGTTAG pLKO_005 286 CDS 100% 10.800 7.560 N ESRP1 n/a
8 TRCN0000149820 CTTGCAGCAAGATGGAACTTA pLKO.1 786 CDS 100% 5.625 3.938 N ESRP1 n/a
9 TRCN0000220031 CTGATTGCAAATAGGCATTTA pLKO.1 2444 3UTR 100% 13.200 7.920 N ESRP1 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_017697.4, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_08417 pDONR223 100% 99.9% 100% None 984C>T;1800T>C n/a
2 ccsbBroad304_08417 pLX_304 0% 99.9% 100% V5 984C>T;1800T>C n/a
3 TRCN0000472693 CAGAGCCGTTCCCTCGTGCTATTA pLX_317 24% 99.9% 100% V5 984C>T;1800T>C n/a
4 ccsbBroadEn_15872 pDONR223 0% 99.2% 99.2% None (many diffs) n/a
5 ccsbBroad304_15872 pLX_304 0% 99.2% 99.2% V5 (many diffs) n/a
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