Construct: ORF ccsbBroad304_15950

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF000408.1_s304c1, BRDN0000408674
Derived from:
ccsbBroadEn_15950
DNA Barcode:
None
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
RANBP10 (57610)

Vector Information:

Vector Backbone:
pLX_304
Pol II Cassette 1:
PGK-BlastR
Pol II Cassette 2:
CMV-ccsbBroad304_15950
Selection Marker:
BlastR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 57610 RANBP10 RAN binding protein 10 NM_020850.3 100% 100%
2 human 57610 RANBP10 RAN binding protein 10 XM_005256070.2 95.3% 95.3% 1350_1439del
3 human 57610 RANBP10 RAN binding protein 10 NM_001320239.2 86.7% 86.7% 398_399ins168;1182_1271del
4 human 57610 RANBP10 RAN binding protein 10 NM_001320238.2 77.3% 77.3% 0_1ins351;999_1088del
5 human 57610 RANBP10 RAN binding protein 10 XM_005256072.2 75% 74.9% 0_1ins384;3_4insAACAGACTTCCT;954_1043del
6 human 57610 RANBP10 RAN binding protein 10 XM_017023507.2 70.3% 67.8% 0_1ins529;38_39ins23
7 human 57610 RANBP10 RAN binding protein 10 XM_006721238.4 65.3% 59.3% (many diffs)
8 human 57610 RANBP10 RAN binding protein 10 NM_001320240.2 63% 63% 0_1ins687
9 human 57610 RANBP10 RAN binding protein 10 XM_017023509.2 63% 63% 0_1ins687
10 human 57610 RANBP10 RAN binding protein 10 XM_011523247.3 60.1% 60.1% 0_1ins687;663_752del
11 human 57610 RANBP10 RAN binding protein 10 XM_017023508.1 60.1% 60.1% 0_1ins687;663_752del
12 human 57610 RANBP10 RAN binding protein 10 XM_011523245.2 55.5% 55.5% 0_1ins777;573_662del
13 mouse 74334 Ranbp10 RAN binding protein 10 NM_145824.4 87.7% 93.5% (many diffs)
14 mouse 74334 Ranbp10 RAN binding protein 10 XM_006531426.1 57.9% 61.4% (many diffs)
15 mouse 74334 Ranbp10 RAN binding protein 10 XM_011248526.1 57.9% 61.4% (many diffs)
16 mouse 74334 Ranbp10 RAN binding protein 10 XM_006531428.3 53.4% 56.7% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
1929
ORF length:
1860
Sequence:
1ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag
61ttggcaccat ggcggcagcg acggcagacc cgggagctgg gaacccgcag cctggggact
121cctccggcgg gggcgctggg ggcgggctgc cgtcccctgg ggagcaggag ctgagccggc
181gcttgcagcg cctgtatccc gcggtcaacc agcaagagac tccgctgccg cgctcctgga
241gccccaagga caaatacaac tacattggtc tctcccaggg caacctccgc gtccactaca
301aaggtcatgg caaaaatcac aaagatgcgg cctcagtgcg tgccacccac cccatacctg
361ctgcctgtgg catttattac tttgaagtga agattgtcag caaaggaaga gatggttaca
421tgggaatagg actctcggct caaggcgtca acatgaacag acttcctggt tgggacaaac
481attcctatgg ttaccatggt gatgatgggc attcgttctg ctcctcgggg actggccagc
541cctatggtcc cacattcacc acaggagacg tgatcggctg ctgtgtcaac ctcatcaatg
601gcacctgctt ctacaccaag aatggccaca gccttggtat agccttcaca gacctcccgg
661ccaacctcta ccccaccgta ggcctgcaga cacctgggga gattgtggac gccaactttg
721ggcagcagcc cttcctgttt gacattgagg actacatgcg ggagtggcgt gccaaggtcc
781agggcacggt ccactgcttc cccatcagtg cccggcttgg cgagtggcag gcagtgctgc
841agaacatggt ttcatcttac ctcgtgcatc atgggtattg tgccacagcc acggcttttg
901ctcgaatgac tgaaaccccg attcaggaag aacaggcgtc cataaagaac agacaaaaga
961tccagaagct ggtgctggag ggccgtgtgg gcgaggccat cgagaccacc cagcgcttct
1021acccagggct gctggagcac aaccccaacc tcctcttcat gctcaagtgc cggcagtttg
1081tggagatggt gaatgggacg gacagtgagg tccgaagttt gagctcccga agccccaagt
1141cccaggacag ctaccctggc tcccccagcc tcagtccccg acatggcccc agtagttccc
1201acatgcacaa cacaggagca gacagtccca gctgtagcaa tggcgtcgcg tccaccaaga
1261gcaaacagaa ccacagtaaa taccctgcac ccagctcctc atcctcgtcc tcctcctcct
1321cctcgtcctc ttccccatcc tccgtcaatt actccgagtc caactcaaca gactccacca
1381agtcccagca ccacagcagt accagtaacc aggagaccag cgacagtgag atggagatgg
1441aggcagagca ctaccccaac ggtgtgctag gaagcatgtc cacacgcatt gttaatggtg
1501cctacaagca tgaggacctg cagacggatg agtccagcat ggatgacagg catcctcggc
1561ggcagctctg cgggggcaac caggctgcca cagaaaggat cattctgttt ggccgcgagt
1621tgcaggcatt gagtgagcag ttgggccggg agtacggcaa gaatttggcc cacacagaga
1681tgctgcagga tgccttcagc ctgctggcat actcagaccc ctggagctgc ccagttggcc
1741agcagcttga ccccatccag agggaacctg tgtgtgctgc cctcaacagc gccattttag
1801agtcccagaa cctgccaaag cagccccctc tgatgctcgc cctgggccag gcatctgagt
1861gtctccggct catggcccga gcaggcctgg gttcttgctc ctttgccaga gttgatgact
1921acttgcactn nccaactttc ttgtacaaag tggttggtaa gcctatccct aaccctctcc
1981tcggtctcga ttctacgtag taatgagcta gcgctaaccg gtggcgcgtt aagtcgacaa
2041tcaacctctg gatta

Download FASTA (ORF) (Full)