Construct: ORF ccsbBroad304_16018
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF004604.1_s304c1, BRDN0000400842
- Derived from:
- ccsbBroadEn_16018
- DNA Barcode:
- None
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- DRC3 (83450)
Vector Information:
- Vector Backbone:
- pLX_304
- Pol II Cassette 1:
- PGK-BlastR
- Pol II Cassette 2:
- CMV-ccsbBroad304_16018
- Selection Marker:
- BlastR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 83450 | DRC3 | dynein regulatory complex s... | NM_001130090.1 | 99.8% | 99.8% | 456C>T;571C>T |
| 2 | human | 83450 | DRC3 | dynein regulatory complex s... | NM_031294.4 | 99.8% | 99.8% | 456C>T;571C>T |
| 3 | human | 83450 | DRC3 | dynein regulatory complex s... | XM_024450966.1 | 99.8% | 99.8% | 456C>T;571C>T |
| 4 | human | 83450 | DRC3 | dynein regulatory complex s... | XM_024450963.1 | 96.3% | 96.3% | 456C>T;571C>T;592_648del |
| 5 | human | 83450 | DRC3 | dynein regulatory complex s... | XM_024450964.1 | 96.3% | 96.3% | 456C>T;571C>T;592_648del |
| 6 | human | 83450 | DRC3 | dynein regulatory complex s... | XM_024450965.1 | 96.3% | 96.3% | 456C>T;571C>T;592_648del |
| 7 | human | 83450 | DRC3 | dynein regulatory complex s... | XM_011524021.2 | 96.1% | 95.9% | 161_220del;516C>T;631C>T |
| 8 | human | 83450 | DRC3 | dynein regulatory complex s... | XM_011524018.2 | 92.9% | 92.7% | (many diffs) |
| 9 | human | 83450 | DRC3 | dynein regulatory complex s... | XM_011524019.2 | 92.9% | 92.7% | (many diffs) |
| 10 | human | 83450 | DRC3 | dynein regulatory complex s... | XM_011524020.2 | 92.9% | 92.7% | (many diffs) |
| 11 | human | 83450 | DRC3 | dynein regulatory complex s... | XM_024450961.1 | 92.9% | 92.7% | (many diffs) |
| 12 | human | 83450 | DRC3 | dynein regulatory complex s... | XM_024450962.1 | 92.9% | 92.7% | (many diffs) |
| 13 | human | 83450 | DRC3 | dynein regulatory complex s... | NM_001130091.2 | 85.8% | 85% | (many diffs) |
| 14 | human | 83450 | DRC3 | dynein regulatory complex s... | NM_001130092.2 | 85.8% | 85% | (many diffs) |
| 15 | human | 83450 | DRC3 | dynein regulatory complex s... | XM_011524022.2 | 79.9% | 79% | (many diffs) |
| 16 | human | 83450 | DRC3 | dynein regulatory complex s... | XM_011524023.2 | 79.9% | 79% | (many diffs) |
| 17 | human | 83450 | DRC3 | dynein regulatory complex s... | XR_934109.2 | 61.8% | (many diffs) | |
| 18 | human | 83450 | DRC3 | dynein regulatory complex s... | XM_011524025.2 | 58.3% | 58.3% | 0_1ins654 |
| 19 | human | 83450 | DRC3 | dynein regulatory complex s... | XM_011524026.2 | 58.3% | 58.3% | 0_1ins654 |
| 20 | human | 83450 | DRC3 | dynein regulatory complex s... | XR_934110.2 | 50% | (many diffs) | |
| 21 | human | 83450 | DRC3 | dynein regulatory complex s... | XR_934111.2 | 48% | (many diffs) | |
| 22 | human | 83450 | DRC3 | dynein regulatory complex s... | XR_001752656.1 | 45.5% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 1635
- ORF length:
- 1569
- Sequence:
-
1 ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag 61 ttggcatgaa ccagccgtgc aactcgatgg agccgagggt gatggacgat gacatgctca 121 agctggccgt cggggaccag ggcccccagg aggaggccgg gcagctggcc aagcaggagg 181 gcatcctctt caaggatgtc ctgtccctgc agctggactt tcggaacatc ctccgcatag 241 acaacctctg gcagtttgag aacttgagga agctgcagct ggacaataac atcattgaga 301 agatcgaggg cctggagaac ctcgcacacc tggtctggct ggatctgtct ttcaacaaca 361 ttgagaccat cgaggggctg gacacactgg tgaacctgga ggacctgagc ttgttcaaca 421 accggatctc caagatcgac tccctggacg ccctcgtcaa gctgcaggtg ttgtcgctgg 481 gcaacaaccg gattgacaac atgatgaaca tcatctacct tcggcggttc aagtgcctgc 541 ggacgctcag cctctctagg aaccctatct ctgaggcaga ggattacaag atgttcatct 601 gtgcctacct tcctgacctc atgtacctgg actactggcg cattgatgac cacacaaaaa 661 agcttgcgga ggctaagcac cagtacagca tcgacgagct gaagcaccag gagaacctga 721 tgcaggccca gctggaggac gagcaggcgc agcgggagga gctagagaag cacaagactg 781 cgtttgtgga acacctgaat ggctccttcc tgtttgacag catgtacgct gaggactcag 841 agggcaacaa tctgtcctac ctgcctggtg tcggtgagct ccttgagacc tacaaggaca 901 agtttgtcat catctgcgtg aatatttttg agtatggcct gaaacagcag gagaagcgga 961 aaacagagct tgacaccttc agtgaatgtg tccgtgaggc catccaggaa aaccaggagc 1021 agggcaaacg caagattgcc aaattcgagg agaagcactt gtcgagttta agtgccattc 1081 gagaggagtt ggaactgccc aacattgaga agatgatcct agaatgcagt gctgacatca 1141 gtgagttgtt cgatgcgctc atgacgctgg agatgcagct ggtggagcag ctggaggaga 1201 ctataaacat gtttgaaagg aacattgttg acatggtagg actgtttatc gaaaatgtcc 1261 aaagcctgat ggctcagtgc cgggacctgg agaatcacca ccacgagaag ctcctggaga 1321 tctctatcag caccctggag aagattgtcg agggcgacct ggacgaggac ctgcctaacg 1381 acctgcgcgc gctttttgtc gataaagata cgattgttaa tgctgtcggg gcatcgcacg 1441 acatccacct cctgaagatt gacaatcgag aagatgagct ggtgaccaga atcaactctt 1501 ggtgtacacg tttaatagac aggattcaca aggatgagat catgaggaac cgcaagcgcg 1561 tgaaggagat caatcagtac atcgaccaca tgcagagcga actggacaac ctggaatgtg 1621 gcgacatcct agactnncca actttcttgt acaaagtggt tggtaagcct atccctaacc 1681 ctctcctcgg tctcgattct acgtagtaat gagctagcgc taaccggtgg cgcgttaagt 1741 cgacaatcaa cctctggatt a