Construct: ORF ccsbBroad304_16115
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF009695.1_s304c1, BRDN0000401038
- Derived from:
- ccsbBroadEn_16115
- DNA Barcode:
- None
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- DEDD2 (162989)
Vector Information:
- Vector Backbone:
- pLX_304
- Pol II Cassette 1:
- PGK-BlastR
- Pol II Cassette 2:
- CMV-ccsbBroad304_16115
- Selection Marker:
- BlastR
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 162989 | DEDD2 | death effector domain conta... | XM_011526572.1 | 72% | 70.7% | 433_447del;557_558insG;570_768del |
| 2 | human | 162989 | DEDD2 | death effector domain conta... | XR_935758.2 | 62.7% | (many diffs) | |
| 3 | human | 162989 | DEDD2 | death effector domain conta... | XM_011526571.1 | 61.6% | 60.5% | 433_447del;557_558insG;570_897del |
| 4 | human | 162989 | DEDD2 | death effector domain conta... | NM_001270615.2 | 57.4% | 56.3% | 542_543insG;555_963del |
| 5 | human | 162989 | DEDD2 | death effector domain conta... | NM_001270614.2 | 56.5% | 55.5% | 433_447del;557_558insG;570_978del |
| 6 | human | 162989 | DEDD2 | death effector domain conta... | NM_133328.4 | 56.5% | 55.5% | 433_447del;557_558insG;570_978del |
| 7 | human | 162989 | DEDD2 | death effector domain conta... | XM_017026403.1 | 56.4% | 55.3% | 433_447del;557_558insG;570_981del |
| 8 | human | 162989 | DEDD2 | death effector domain conta... | XM_011526569.1 | 50.4% | 49.4% | 433_447del;557_558insG;570_1098del |
| 9 | human | 162989 | DEDD2 | death effector domain conta... | XM_017026402.1 | 50.4% | 49.4% | 433_447del;557_558insG;570_1098del |
| 10 | human | 162989 | DEDD2 | death effector domain conta... | XM_024451400.1 | 50.4% | 49.4% | 433_447del;557_558insG;570_1098del |
| 11 | human | 162989 | DEDD2 | death effector domain conta... | NR_073047.2 | 14.7% | (many diffs) | |
| 12 | human | 162989 | DEDD2 | death effector domain conta... | NR_073050.2 | 14.3% | (many diffs) | |
| 13 | human | 162989 | DEDD2 | death effector domain conta... | NR_073048.2 | 14.2% | (many diffs) | |
| 14 | human | 162989 | DEDD2 | death effector domain conta... | NR_073049.2 | 14% | (many diffs) | |
| 15 | human | 162989 | DEDD2 | death effector domain conta... | NR_073051.2 | 13.6% | (many diffs) | |
| 16 | human | 162989 | DEDD2 | death effector domain conta... | NR_073046.2 | 13.5% | (many diffs) | |
| 17 | mouse | 67379 | Dedd2 | death effector domain-conta... | NM_207677.3 | 47.9% | 48.7% | (many diffs) |
| 18 | mouse | 67379 | Dedd2 | death effector domain-conta... | XM_006540322.1 | 47.9% | 48.7% | (many diffs) |
| 19 | mouse | 67379 | Dedd2 | death effector domain-conta... | XR_391094.2 | 45.5% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 621
- ORF length:
- 555
- Sequence:
-
1 ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag 61 ttggcatggc gctatccggg tcgaccccgg ccccgtgctg ggaggaggat gagtgcctgg 121 actactacgg gatgctgtcg cttcaccgta tgttcgaggt ggtgggcggg caactgaccg 181 agtgcgagct ggagctcctg gcctttctgc tggatgaggc tcctggcgcc gccggaggct 241 tagcccgggc ccgcagcggc ctagagctcc tgctggagct ggagcgccgc gggcagtgcg 301 acgagagcaa cctgcggctg ctggggcaac tcctgcgcgt gctggcccgc cacgacctgc 361 tgccgcacct ggcgcgcaag cggcgccggc cagtgtctcc agaacgctat agctatggca 421 cctccagctc ttcaaagagg acagagggta gctgccgtcg ccgtcggcag tcaagcagtt 481 ctgcaaattc tcagcagggc tcccccccaa ccaagcggca gcggcggagt cggggccggc 541 ccagtggtgg tgccagacgg cggcggagag gggccccagc cgcaccccag cagcagtcag 601 agcccgcgca gaccttcctc tnnccaactt tcttgtacaa agtggttggt aagcctatcc 661 ctaaccctct cctcggtctc gattctacgt agtaatgagc tagcgctaac cggtggcgcg 721 ttaagtcgac aatcaacctc tggatta