Construct: ORF ccsbBroad304_16136

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF009880.1_s304c1, BRDN0000409788
Derived from:
ccsbBroadEn_16136
DNA Barcode:
None
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
HEATR9 (256957)

Vector Information:

Vector Backbone:
pLX_304
Pol II Cassette 1:
PGK-BlastR
Pol II Cassette 2:
CMV-ccsbBroad304_16136
Selection Marker:
BlastR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 256957 HEATR9 HEAT repeat containing 9 XM_017024424.2 42.1% 38.3% (many diffs)
2 human 256957 HEATR9 HEAT repeat containing 9 NM_152781.4 36.7% 33.5% (many diffs)
3 human 256957 HEATR9 HEAT repeat containing 9 NR_135630.2 31.2% (many diffs)
4 human 256957 HEATR9 HEAT repeat containing 9 XM_005278233.2 30.8% 27.6% (many diffs)
5 human 256957 HEATR9 HEAT repeat containing 9 XM_011524586.2 30.8% 27.6% (many diffs)
6 human 256957 HEATR9 HEAT repeat containing 9 XR_934432.3 30% (many diffs)
7 human 256957 HEATR9 HEAT repeat containing 9 NM_001321395.2 29.8% 26.5% (many diffs)
8 human 256957 HEATR9 HEAT repeat containing 9 XR_934433.1 29.4% (many diffs)
9 human 256957 HEATR9 HEAT repeat containing 9 XR_934434.1 24.5% (many diffs)
10 human 256957 HEATR9 HEAT repeat containing 9 XM_005278235.1 23.8% 20.7% (many diffs)
11 human 256957 HEATR9 HEAT repeat containing 9 XR_254513.3 23.7% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
723
ORF length:
657
Sequence:
1ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag
61ttggcatggc ctatgaaaaa tcaactgata tctctgatgt ctccaggtca atgttcctgt
121acccatggct ggaatatcca gacaagacca aagaactcag aaaagccatg gctcctgttc
181atctgccctt gtcctgctac cagatgccaa aggaagagtt tcccccaagt ccagagtgct
241ggaggcagca tccgagcaag ccaaactcag tcccgtactg ctacttcaag aaacctgaga
301tctacacgca ctggcacgac ctgtatgatc agcgagagga aagggaggct gagaagatgt
361tgaggaaaat gagagatgac tgtaggtaca tcaaagaggt acatcaaacc cacatcaaaa
421tgttccatct cccaatgagc aagctgacta taaaatctga gatgcgatcc aggcccttag
481agcctaccca ggaccccctg aagtggcaaa gattaaggga actcacaaaa agcctggaat
541ctcccagaga ggatgagcag ttctatgcag cacaggctct gggatgctta cgcatcagtg
601acaagtttgt catggaggca ctacagcagg tggtgagtct gagaactgct ggagttcagg
661aaagaaggaa acagggtctg agatgtgtgg catgtgggca cagacgaggc tccccggggt
721gctnnccaac tttcttgtac aaagtggttg gtaagcctat ccctaaccct ctcctcggtc
781tcgattctac gtagtaatga gctagcgcta accggtggcg cgttaagtcg acaatcaacc
841tctggatta

Download FASTA (ORF) (Full)