Construct: ORF ccsbBroadEn_00003

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF003876.1_s300c1, BRDN0000386392
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
ABAT (18)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 18 ABAT 4-aminobutyrate aminotransf... NM_000663.4 100% 100%
2 human 18 ABAT 4-aminobutyrate aminotransf... NM_001127448.2 100% 100%
3 human 18 ABAT 4-aminobutyrate aminotransf... NM_020686.6 100% 100%
4 human 18 ABAT 4-aminobutyrate aminotransf... XM_011522400.2 100% 100%
5 human 18 ABAT 4-aminobutyrate aminotransf... XM_011522401.2 100% 100%
6 mouse 268860 Abat 4-aminobutyrate aminotransf... NM_172961.3 87.2% 91.2% (many diffs)
7 mouse 268860 Abat 4-aminobutyrate aminotransf... NM_001170978.1 77% 80.2% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1566
ORF length:
1500
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGGC CTCCATGTTG CTCGCCCAGC GCCTGGCCTG CAGCTTCCAG CACAGCTACC
121GCCTGCTGGT GCCTGGATCC AGACACATTA GTCAAGCTGC AGCCAAAGTC GACGTTGAAT
181TTGATTATGA TGGGCCTCTG ATGAAGACGG AAGTCCCAGG GCCTAGATCT CAGGAGTTAA
241TGAAACAGCT GAATATAATT CAGAATGCAG AGGCTGTGCA TTTTTTCTGC AATTACGAAG
301AGAGCCGAGG CAATTACCTG GTTGATGTGG ACGGCAACCG AATGCTGGAT CTTTATTCCC
361AGATCTCCTC TGTCCCCATA GGTTACAGCC ACCCCGCCCT GCTGAAACTC ATCCAACAGC
421CTCAAAATGC GAGCATGTTT GTCAACAGAC CCGCCCTCGG AATCCTGCCT CCGGAGAACT
481TTGTGGAGAA GCTCCGGCAG TCCTTGCTCT CGGTGGCTCC CAAAGGGATG TCCCAGCTCA
541TCACCATGGC CTGCGGCTCC TGCTCCAATG AAAACGCCTT AAAGACCATC TTCATGTGGT
601ACCGGAGCAA GGAAAGAGGG CAGAGGGGCT TCTCCCAGGA GGAGCTGGAG ACGTGCATGA
661TTAACCAGGC CCCTGGCTGC CCCGACTACA GCATCCTCTC CTTCATGGGC GCGTTCCATG
721GGAGGACCAT GGGTTGCTTA GCGACCACGC ACTCTAAAGC CATTCACAAG ATCGACATCC
781CTTCCTTTGA CTGGCCCATC GCACCGTTCC CACGGCTGAA ATACCCTCTG GAAGAGTTTG
841TGAAAGAGAA CCAACAGGAG GAGGCCCGCT GTCTGGAAGA GGTGGAGGAT CTGATTGTGA
901AATATCGGAA AAAGAAGAAG ACGGTGGCCG GGATCATCGT GGAGCCCATC CAGTCCGAGG
961GTGGAGACAA CCACGCATCC GATGACTTCT TTCGGAAGCT GAGAGACATC GCCAGGAAGC
1021ATGGCTGCGC CTTCTTGGTG GACGAGGTCC AGACCGGAGG AGGCTGCACG GGCAAGTTCT
1081GGGCCCATGA GCACTGGGGC CTGGATGACC CAGCAGACGT GATGACCTTC AGCAAGAAGA
1141TGATGACTGG GGGCTTCTTC CACAAGGAGG AGTTCAGGCC TAATGCTCCC TACCGGATCT
1201TCAACACCTG GCTGGGGGAC CCGTCCAAGA ACCTGTTGCT GGCTGAGGTC ATCAACATCA
1261TCAAGCGGGA GGACCTGCTA AATAATGCAG CCCATGCCGG GAAGGCCCTG CTCACAGGAC
1321TGCTGGACCT CCAGGCCCGG TACCCCCAGT TCATCAGCAG GGTGAGAGGA CGAGGCACCT
1381TTTGCTCCTT CGATACTCCC GATGATTCCA TACGGAATAA GCTCATTTTA ATTGCCAGAA
1441ACAAAGGTGT GGTGTTGGGT GGCTGTGGTG ACAAATCCAT TCGTTTCCGT CCCACGCTGG
1501TCTTCAGGGA TCACCACGCT CACCTGTTCC TCAATATTTT CAGTGACATC TTAGCAGACT
1561TCAAGTACCC AACTTTCTTG TACAAAGTtg gcattataag aaagcattgc ttatcaattt
1621gttgcaacga ac

Download FASTA (ORF) (Full)