Transcript: Human NM_020686.6

Homo sapiens 4-aminobutyrate aminotransferase (ABAT), transcript variant 1, mRNA.

Source:
NCBI, updated 2019-09-27
Taxon:
Homo sapiens (human)
Gene:
ABAT (18)
Length:
4779
CDS:
137..1639

Additional Resources:

NCBI RefSeq record:
NM_020686.6
NBCI Gene record:
ABAT (18)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NM_020686.6, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000034924 CGCCTTAAAGACCATCTTCAT pLKO.1 646 CDS 100% 4.950 6.930 N ABAT n/a
2 TRCN0000363578 CGCCTTAAAGACCATCTTCAT pLKO_005 646 CDS 100% 4.950 6.930 N ABAT n/a
3 TRCN0000034925 CCCGATGATTCCATACGGAAT pLKO.1 1469 CDS 100% 0.405 0.567 N ABAT n/a
4 TRCN0000327875 CCCGATGATTCCATACGGAAT pLKO_005 1469 CDS 100% 0.405 0.567 N ABAT n/a
5 TRCN0000034928 GCAACCGAATGCTGGATCTTT pLKO.1 405 CDS 100% 5.625 4.500 N ABAT n/a
6 TRCN0000363577 GCAACCGAATGCTGGATCTTT pLKO_005 405 CDS 100% 5.625 4.500 N ABAT n/a
7 TRCN0000034927 CGGGAGGACCTGCTAAATAAT pLKO.1 1337 CDS 100% 15.000 10.500 N ABAT n/a
8 TRCN0000327801 CGGGAGGACCTGCTAAATAAT pLKO_005 1337 CDS 100% 15.000 10.500 N ABAT n/a
9 TRCN0000377429 GTTGTCAAATTGATTAGTTTG pLKO_005 1682 3UTR 100% 10.800 7.560 N ABAT n/a
10 TRCN0000370053 TGCACAGTGAAGGGTGATTTG pLKO_005 1741 3UTR 100% 10.800 7.560 N ABAT n/a
11 TRCN0000034926 GCACTCTAAAGCCATTCACAA pLKO.1 820 CDS 100% 4.950 3.465 N ABAT n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_020686.6, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_00003 pDONR223 100% 100% 100% None n/a
2 ccsbBroad304_00003 pLX_304 0% 100% 100% V5 n/a
3 TRCN0000491557 GCCATACTGGAACATTCCGATAAC pLX_317 24.1% 100% 100% V5 n/a
4 ccsbBroadEn_05754 pDONR223 100% 99.8% 99.8% None 167A>G;984C>A;1074G>A n/a
5 ccsbBroad304_05754 pLX_304 0% 99.8% 99.8% V5 167A>G;984C>A;1074G>A n/a
6 TRCN0000472145 CAGGTCGATGCAAATCTAGTTCCT pLX_317 23.6% 99.8% 99.8% V5 167A>G;984C>A;1074G>A n/a
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