Construct: ORF ccsbBroadEn_00135

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF003246.1_s300c1, BRDN0000392088
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
ATP6V0C (527)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 527 ATP6V0C ATPase H+ transporting V0 s... NM_001198569.1 100% 100%
2 human 527 ATP6V0C ATPase H+ transporting V0 s... NM_001694.4 100% 100%
3 mouse 11984 Atp6v0c ATPase, H+ transporting, ly... NM_009729.3 86.8% 90.9% (many diffs)
4 mouse 100039636 Atp6v0c-ps2 ATPase, H+ transporting, ly... NR_037854.1 35.7% (many diffs)
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Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
531
ORF length:
465
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGTC CGAGTCCAAG AGCGGCCCCG AGTATGCTTC GTTTTTCGCC GTCATGGGCG
121CCTCGGCCGC CATGGTCTTC AGCGCCCTGG GCGCTGCCTA TGGCACAGCC AAGAGCGGTA
181CCGGCATTGC GGCCATGTCT GTCATGCGGC CGGAGCAGAT CATGAAGTCC ATCATCCCAG
241TGGTCATGGC TGGCATCATC GCCATCTACG GCCTGGTGGT GGCAGTCCTC ATCGCCAACT
301CCCTGAATGA CGACATCAGC CTCTACAAGA GCTTCCTCCA GCTGGGCGCC GGCCTGAGCG
361TGGGCCTGAG CGGCCTGGCA GCCGGCTTTG CCATCGGCAT CGTGGGGGAC GCTGGCGTGC
421GGGGCACCGC CCAGCAGCCC CGACTATTCG TGGGCATGAT CCTGATTCTC ATCTTCGCCG
481AGGTGCTCGG CCTCTACGGT CTCATCGTCG CCCTCATCCT CTCCACAAAG TACCCAACTT
541TCTTGTACAA AGTtggcatt ataagaaagc attgcttatc aatttgttgc aacgaac

Download FASTA (ORF) (Full)