Transcript: Mouse NM_009729.3

Mus musculus ATPase, H+ transporting, lysosomal V0 subunit C (Atp6v0c), mRNA.

Source:
NCBI, updated 2017-05-28
Taxon:
Mus musculus (mouse)
Gene:
Atp6v0c (11984)
Length:
1151
CDS:
146..613

Additional Resources:

NCBI RefSeq record:
NM_009729.3
NBCI Gene record:
Atp6v0c (11984)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse NM_009729.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000101612 CCTAATCCTCTCCACAAAGTA pLKO.1 592 CDS 100% 5.625 2.813 Y Atp6v0c n/a
2 TRCN0000323878 CCTAATCCTCTCCACAAAGTA pLKO_005 592 CDS 100% 5.625 2.813 Y Atp6v0c n/a
3 TRCN0000101610 CCTCAGTAGTTGGTCTTGTAA pLKO.1 705 3UTR 100% 5.625 2.813 Y Atp6v0c n/a
4 TRCN0000323810 CCTCAGTAGTTGGTCTTGTAA pLKO_005 705 3UTR 100% 5.625 2.813 Y Atp6v0c n/a
5 TRCN0000101611 CATCACCCTCTACAGGAGTTT pLKO.1 394 CDS 100% 4.950 2.475 Y Atp6v0c n/a
6 TRCN0000323879 CATCACCCTCTACAGGAGTTT pLKO_005 394 CDS 100% 4.950 2.475 Y Atp6v0c n/a
7 TRCN0000101613 GCTGATCATGAAGTCCATCAT pLKO.1 295 CDS 100% 4.950 2.475 Y Atp6v0c n/a
8 TRCN0000323809 GCTGATCATGAAGTCCATCAT pLKO_005 295 CDS 100% 4.950 2.475 Y Atp6v0c n/a
9 TRCN0000101614 CCCAGTGGTTATGGCTGGGAT pLKO.1 316 CDS 100% 0.088 0.044 Y Atp6v0c n/a
Download CSV

shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_009729.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

Download CSV

All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_00135 pDONR223 100% 86.8% 90.9% None (many diffs) n/a
2 ccsbBroad304_00135 pLX_304 0% 86.8% 90.9% V5 (many diffs) n/a
3 TRCN0000467314 AGTCCTCGTGCTGAATCCCCGTCT pLX_317 56.7% 86.8% 90.9% V5 (many diffs) n/a
4 ccsbBroadEn_15366 pDONR223 0% 86.6% 90.9% None (many diffs) n/a
5 ccsbBroad304_15366 pLX_304 0% 86.6% 90.9% V5 (many diffs) n/a
6 TRCN0000465283 CGGCTGAAAAAAAGTGGGTGCGAG pLX_317 56.7% 86.6% 90.9% V5 (many diffs) n/a
7 ccsbBroadEn_10691 pDONR223 100% 63.6% 69% None (many diffs) n/a
8 ccsbBroad304_10691 pLX_304 0% 63.6% 69% V5 (many diffs) n/a
9 TRCN0000472683 CTCGCCTAGTACTGAAGGCTCTGC pLX_317 100% 63.6% 69% V5 (many diffs) n/a
Download CSV