Transcript: Human NM_001198569.1

Homo sapiens ATPase H+ transporting V0 subunit c (ATP6V0C), transcript variant 2, mRNA.

Source:
NCBI, updated 2019-09-21
Taxon:
Homo sapiens (human)
Gene:
ATP6V0C (527)
Length:
1021
CDS:
76..543

Additional Resources:

NCBI RefSeq record:
NM_001198569.1
NBCI Gene record:
ATP6V0C (527)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NM_001198569.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000323222 CTTGTCTCCCAGCTATCTATA pLKO_005 876 3UTR 100% 13.200 9.240 N ATP6V0C n/a
2 TRCN0000029562 CTCATCGCCAACTCCCTGAAT pLKO.1 298 CDS 100% 4.950 3.465 N ATP6V0C n/a
3 TRCN0000029559 TGACGACATCAGCCTCTACAA pLKO.1 318 CDS 100% 4.950 3.465 N ATP6V0C n/a
4 TRCN0000323154 TGACGACATCAGCCTCTACAA pLKO_005 318 CDS 100% 4.950 3.465 N ATP6V0C n/a
5 TRCN0000029563 GCGCTGCCTATGGCACAGCCA pLKO.1 161 CDS 100% 0.000 0.000 N ATP6V0C n/a
6 TRCN0000323220 GCGCTGCCTATGGCACAGCCA pLKO_005 161 CDS 100% 0.000 0.000 N ATP6V0C n/a
7 TRCN0000029560 CGCCCTCATCCTCTCCACAAA pLKO.1 519 CDS 100% 1.650 0.990 N ATP6V0C n/a
8 TRCN0000029561 GCTCGGCCTCTACGGTCTCAT pLKO.1 495 CDS 100% 0.000 0.000 N ATP6V0C n/a
9 TRCN0000323221 GCTCGGCCTCTACGGTCTCAT pLKO_005 495 CDS 100% 0.000 0.000 N ATP6V0C n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_001198569.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_00135 pDONR223 100% 100% 100% None n/a
2 ccsbBroad304_00135 pLX_304 0% 100% 100% V5 n/a
3 TRCN0000467314 AGTCCTCGTGCTGAATCCCCGTCT pLX_317 56.7% 100% 100% V5 n/a
4 ccsbBroadEn_15366 pDONR223 0% 99.7% 100% None 168C>T n/a
5 ccsbBroad304_15366 pLX_304 0% 99.7% 100% V5 168C>T n/a
6 TRCN0000465283 CGGCTGAAAAAAAGTGGGTGCGAG pLX_317 56.7% 99.7% 100% V5 168C>T n/a
7 ccsbBroadEn_10691 pDONR223 100% 72.2% 72.2% None 1_129del n/a
8 ccsbBroad304_10691 pLX_304 0% 72.2% 72.2% V5 1_129del n/a
9 TRCN0000472683 CTCGCCTAGTACTGAAGGCTCTGC pLX_317 100% 72.2% 72.2% V5 1_129del n/a
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