Construct: ORF ccsbBroadEn_00156

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF017908.1_s300c1, BRDN0000388917
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
BCL2L1 (598)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 598 BCL2L1 BCL2 like 1 NM_001317919.2 100% 100%
2 human 598 BCL2L1 BCL2 like 1 NM_001317920.2 100% 100%
3 human 598 BCL2L1 BCL2 like 1 NM_001317921.2 100% 100%
4 human 598 BCL2L1 BCL2 like 1 NM_001322239.2 100% 100%
5 human 598 BCL2L1 BCL2 like 1 NM_001322240.2 100% 100%
6 human 598 BCL2L1 BCL2 like 1 NM_001322242.2 100% 100%
7 human 598 BCL2L1 BCL2 like 1 NM_138578.3 100% 100%
8 human 598 BCL2L1 BCL2 like 1 XM_011528964.2 100% 100%
9 human 598 BCL2L1 BCL2 like 1 XM_017027993.1 100% 100%
10 human 598 BCL2L1 BCL2 like 1 NM_001191.4 72.9% 72.9% 374_375ins189
11 human 598 BCL2L1 BCL2 like 1 NR_134257.1 28.2% 1_112del;674_830del;969_2474del
12 human 598 BCL2L1 BCL2 like 1 XR_001754364.2 25.7% 1_363del;925_1081del;1220_2713del
13 human 598 BCL2L1 BCL2 like 1 XR_936599.3 25.5% 1_381del;943_1099del;1238_2731del
14 mouse 12048 Bcl2l1 BCL2-like 1 NM_001289716.1 93.5% 97.8% (many diffs)
15 mouse 12048 Bcl2l1 BCL2-like 1 NM_001289717.1 93.5% 97.8% (many diffs)
16 mouse 12048 Bcl2l1 BCL2-like 1 NM_009743.5 93.5% 97.8% (many diffs)
17 mouse 12048 Bcl2l1 BCL2-like 1 XM_006498609.3 93.5% 97.8% (many diffs)
18 mouse 12048 Bcl2l1 BCL2-like 1 XM_006498611.3 93.5% 97.8% (many diffs)
19 mouse 12048 Bcl2l1 BCL2-like 1 XM_006498612.2 93.5% 97.8% (many diffs)
20 mouse 12048 Bcl2l1 BCL2-like 1 XM_011239260.2 93.5% 97.8% (many diffs)
21 mouse 12048 Bcl2l1 BCL2-like 1 NM_001289739.1 80.3% 71.6% (many diffs)
22 mouse 12048 Bcl2l1 BCL2-like 1 XR_374396.3 15% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
765
ORF length:
699
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGTC TCAGAGCAAC CGGGAGCTGG TGGTTGACTT TCTCTCCTAC AAGCTTTCCC
121AGAAAGGATA CAGCTGGAGT CAGTTTAGTG ATGTGGAAGA GAACAGGACT GAGGCCCCAG
181AAGGGACTGA ATCGGAGATG GAGACCCCCA GTGCCATCAA TGGCAACCCA TCCTGGCACC
241TGGCAGACAG CCCCGCGGTG AATGGAGCCA CTGGCCACAG CAGCAGTTTG GATGCCCGGG
301AGGTGATCCC CATGGCAGCA GTAAAGCAAG CGCTGAGGGA GGCAGGCGAC GAGTTTGAAC
361TGCGGTACCG GCGGGCATTC AGTGACCTGA CATCCCAGCT CCACATCACC CCAGGGACAG
421CATATCAGAG CTTTGAACAG GTAGTGAATG AACTCTTCCG GGATGGGGTA AACTGGGGTC
481GCATTGTGGC CTTTTTCTCC TTCGGCGGGG CACTGTGCGT GGAAAGCGTA GACAAGGAGA
541TGCAGGTATT GGTGAGTCGG ATCGCAGCTT GGATGGCCAC TTACCTGAAT GACCACCTAG
601AGCCTTGGAT CCAGGAGAAC GGCGGCTGGG ATACTTTTGT GGAACTCTAT GGGAACAATG
661CAGCAGCCGA GAGCCGAAAG GGCCAGGAAC GCTTCAACCG CTGGTTCCTG ACGGGCATGA
721CTGTGGCCGG CGTGGTTCTG CTGGGCTCAC TCTTCAGTCG GAAATGCCCA ACTTTCTTGT
781ACAAAGTtgg cattataaga aagcattgct tatcaatttg ttgcaacgaa c

Download FASTA (ORF) (Full)