Construct: ORF ccsbBroadEn_00156
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF017908.1_s300c1, BRDN0000388917
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- BCL2L1 (598)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 598 | BCL2L1 | BCL2 like 1 | NM_001317919.2 | 100% | 100% | |
| 2 | human | 598 | BCL2L1 | BCL2 like 1 | NM_001317920.2 | 100% | 100% | |
| 3 | human | 598 | BCL2L1 | BCL2 like 1 | NM_001317921.2 | 100% | 100% | |
| 4 | human | 598 | BCL2L1 | BCL2 like 1 | NM_001322239.2 | 100% | 100% | |
| 5 | human | 598 | BCL2L1 | BCL2 like 1 | NM_001322240.2 | 100% | 100% | |
| 6 | human | 598 | BCL2L1 | BCL2 like 1 | NM_001322242.2 | 100% | 100% | |
| 7 | human | 598 | BCL2L1 | BCL2 like 1 | NM_138578.3 | 100% | 100% | |
| 8 | human | 598 | BCL2L1 | BCL2 like 1 | XM_011528964.2 | 100% | 100% | |
| 9 | human | 598 | BCL2L1 | BCL2 like 1 | XM_017027993.1 | 100% | 100% | |
| 10 | human | 598 | BCL2L1 | BCL2 like 1 | NM_001191.4 | 72.9% | 72.9% | 374_375ins189 |
| 11 | human | 598 | BCL2L1 | BCL2 like 1 | NR_134257.1 | 28.2% | 1_112del;674_830del;969_2474del | |
| 12 | human | 598 | BCL2L1 | BCL2 like 1 | XR_001754364.2 | 25.7% | 1_363del;925_1081del;1220_2713del | |
| 13 | human | 598 | BCL2L1 | BCL2 like 1 | XR_936599.3 | 25.5% | 1_381del;943_1099del;1238_2731del | |
| 14 | mouse | 12048 | Bcl2l1 | BCL2-like 1 | NM_001289716.1 | 93.5% | 97.8% | (many diffs) |
| 15 | mouse | 12048 | Bcl2l1 | BCL2-like 1 | NM_001289717.1 | 93.5% | 97.8% | (many diffs) |
| 16 | mouse | 12048 | Bcl2l1 | BCL2-like 1 | NM_009743.5 | 93.5% | 97.8% | (many diffs) |
| 17 | mouse | 12048 | Bcl2l1 | BCL2-like 1 | XM_006498609.3 | 93.5% | 97.8% | (many diffs) |
| 18 | mouse | 12048 | Bcl2l1 | BCL2-like 1 | XM_006498611.3 | 93.5% | 97.8% | (many diffs) |
| 19 | mouse | 12048 | Bcl2l1 | BCL2-like 1 | XM_006498612.2 | 93.5% | 97.8% | (many diffs) |
| 20 | mouse | 12048 | Bcl2l1 | BCL2-like 1 | XM_011239260.2 | 93.5% | 97.8% | (many diffs) |
| 21 | mouse | 12048 | Bcl2l1 | BCL2-like 1 | NM_001289739.1 | 80.3% | 71.6% | (many diffs) |
| 22 | mouse | 12048 | Bcl2l1 | BCL2-like 1 | XR_374396.3 | 15% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 765
- ORF length:
- 699
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGTC TCAGAGCAAC CGGGAGCTGG TGGTTGACTT TCTCTCCTAC AAGCTTTCCC 121 AGAAAGGATA CAGCTGGAGT CAGTTTAGTG ATGTGGAAGA GAACAGGACT GAGGCCCCAG 181 AAGGGACTGA ATCGGAGATG GAGACCCCCA GTGCCATCAA TGGCAACCCA TCCTGGCACC 241 TGGCAGACAG CCCCGCGGTG AATGGAGCCA CTGGCCACAG CAGCAGTTTG GATGCCCGGG 301 AGGTGATCCC CATGGCAGCA GTAAAGCAAG CGCTGAGGGA GGCAGGCGAC GAGTTTGAAC 361 TGCGGTACCG GCGGGCATTC AGTGACCTGA CATCCCAGCT CCACATCACC CCAGGGACAG 421 CATATCAGAG CTTTGAACAG GTAGTGAATG AACTCTTCCG GGATGGGGTA AACTGGGGTC 481 GCATTGTGGC CTTTTTCTCC TTCGGCGGGG CACTGTGCGT GGAAAGCGTA GACAAGGAGA 541 TGCAGGTATT GGTGAGTCGG ATCGCAGCTT GGATGGCCAC TTACCTGAAT GACCACCTAG 601 AGCCTTGGAT CCAGGAGAAC GGCGGCTGGG ATACTTTTGT GGAACTCTAT GGGAACAATG 661 CAGCAGCCGA GAGCCGAAAG GGCCAGGAAC GCTTCAACCG CTGGTTCCTG ACGGGCATGA 721 CTGTGGCCGG CGTGGTTCTG CTGGGCTCAC TCTTCAGTCG GAAATGCCCA ACTTTCTTGT 781 ACAAAGTtgg cattataaga aagcattgct tatcaatttg ttgcaacgaa c