Construct: ORF ccsbBroadEn_00168
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF013703.1_s300c1, BRDN0000387078
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- BMPR1B (658)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 658 | BMPR1B | bone morphogenetic protein ... | NM_001203.3 | 100% | 100% | |
| 2 | human | 658 | BMPR1B | bone morphogenetic protein ... | NM_001256792.1 | 100% | 100% | |
| 3 | human | 658 | BMPR1B | bone morphogenetic protein ... | NM_001256794.1 | 100% | 100% | |
| 4 | human | 658 | BMPR1B | bone morphogenetic protein ... | XM_011532201.2 | 100% | 100% | |
| 5 | human | 658 | BMPR1B | bone morphogenetic protein ... | XM_017008558.1 | 100% | 100% | |
| 6 | human | 658 | BMPR1B | bone morphogenetic protein ... | XM_017008559.1 | 100% | 100% | |
| 7 | human | 658 | BMPR1B | bone morphogenetic protein ... | XM_017008560.1 | 100% | 100% | |
| 8 | human | 658 | BMPR1B | bone morphogenetic protein ... | XM_017008561.1 | 100% | 100% | |
| 9 | human | 658 | BMPR1B | bone morphogenetic protein ... | NM_001256793.2 | 94.3% | 94.3% | 1_90del |
| 10 | mouse | 12167 | Bmpr1b | bone morphogenetic protein ... | NM_001277216.1 | 89.2% | 98.2% | (many diffs) |
| 11 | mouse | 12167 | Bmpr1b | bone morphogenetic protein ... | NM_001277217.1 | 89.2% | 98.2% | (many diffs) |
| 12 | mouse | 12167 | Bmpr1b | bone morphogenetic protein ... | NM_001277218.1 | 89.2% | 98.2% | (many diffs) |
| 13 | mouse | 12167 | Bmpr1b | bone morphogenetic protein ... | NM_007560.4 | 89.2% | 98.2% | (many diffs) |
| 14 | mouse | 12167 | Bmpr1b | bone morphogenetic protein ... | XM_006500939.3 | 89.2% | 98.2% | (many diffs) |
| 15 | mouse | 12167 | Bmpr1b | bone morphogenetic protein ... | XM_006500940.3 | 89.2% | 98.2% | (many diffs) |
| 16 | mouse | 12167 | Bmpr1b | bone morphogenetic protein ... | XM_006500942.1 | 89.2% | 98.2% | (many diffs) |
| 17 | mouse | 12167 | Bmpr1b | bone morphogenetic protein ... | XM_006500943.3 | 89.2% | 98.2% | (many diffs) |
| 18 | mouse | 12167 | Bmpr1b | bone morphogenetic protein ... | XM_006500944.2 | 89.2% | 98.2% | (many diffs) |
| 19 | mouse | 12167 | Bmpr1b | bone morphogenetic protein ... | XM_011240001.1 | 89.2% | 98.2% | (many diffs) |
| 20 | mouse | 12167 | Bmpr1b | bone morphogenetic protein ... | XM_011240002.2 | 89.2% | 98.2% | (many diffs) |
| 21 | mouse | 12167 | Bmpr1b | bone morphogenetic protein ... | NM_001277220.1 | 87.3% | 88.4% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 1572
- ORF length:
- 1506
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGCT TTTGCGAAGT GCAGGAAAAT TAAATGTGGG CACCAAGAAA GAGGATGGTG 121 AGAGTACAGC CCCCACCCCC CGTCCAAAGG TCTTGCGTTG TAAATGCCAC CACCATTGTC 181 CAGAAGACTC AGTCAACAAT ATTTGCAGCA CAGACGGATA TTGTTTCACG ATGATAGAAG 241 AGGATGACTC TGGGTTGCCT GTGGTCACTT CTGGTTGCCT AGGACTAGAA GGCTCAGATT 301 TTCAGTGTCG GGACACTCCC ATTCCTCATC AAAGAAGATC AATTGAATGC TGCACAGAAA 361 GGAACGAATG TAATAAAGAC CTACACCCTA CACTGCCTCC ATTGAAAAAC AGAGATTTTG 421 TTGATGGACC TATACACCAC AGGGCTTTAC TTATATCTGT GACTGTCTGT AGTTTGCTCT 481 TGGTCCTTAT CATATTATTT TGTTACTTCC GGTATAAAAG ACAAGAAACC AGACCTCGAT 541 ACAGCATTGG GTTAGAACAG GATGAAACTT ACATTCCTCC TGGAGAATCC CTGAGAGACT 601 TAATTGAGCA GTCTCAGAGC TCAGGAAGTG GATCAGGCCT CCCTCTGCTG GTCCAAAGGA 661 CTATAGCTAA GCAGATTCAG ATGGTGAAAC AGATTGGAAA AGGTCGCTAT GGGGAAGTTT 721 GGATGGGAAA GTGGCGTGGC GAAAAGGTAG CTGTGAAAGT GTTCTTCACC ACAGAGGAAG 781 CCAGCTGGTT CAGAGAGACA GAAATATATC AGACAGTGTT GATGAGGCAT GAAAACATTT 841 TGGGTTTCAT TGCTGCAGAT ATCAAAGGGA CAGGGTCCTG GACCCAGTTG TACCTAATCA 901 CAGACTATCA TGAAAATGGT TCCCTTTATG ATTATCTGAA GTCCACCACC CTAGACGCTA 961 AATCAATGCT GAAGTTAGCC TACTCTTCTG TCAGTGGCTT ATGTCATTTA CACACAGAAA 1021 TCTTTAGTAC TCAAGGCAAA CCAGCAATTG CCCATCGAGA TCTGAAAAGT AAAAACATTC 1081 TGGTGAAGAA AAATGGAACT TGCTGTATTG CTGACCTGGG CCTGGCTGTT AAATTTATTA 1141 GTGATACAAA TGAAGTTGAC ATACCACCTA ACACTCGAGT TGGCACCAAA CGCTATATGC 1201 CTCCAGAAGT GTTGGACGAG AGCTTGAACA GAAATCACTT CCAGTCTTAC ATCATGGCTG 1261 ACATGTATAG TTTTGGCCTC ATCCTTTGGG AGGTTGCTAG GAGATGTGTA TCAGGAGGTA 1321 TAGTGGAAGA ATACCAGCTT CCTTATCATG ACCTAGTGCC CAGTGACCCC TCTTATGAGG 1381 ACATGAGGGA GATTGTGTGC ATCAAGAAGT TACGCCCCTC ATTCCCAAAC CGGTGGAGCA 1441 GTGATGAGTG TCTAAGGCAG ATGGGAAAAC TCATGACAGA ATGCTGGGCT CACAATCCTG 1501 CATCAAGGCT GACAGCCCTG CGGGTTAAGA AAACACTTGC CAAAATGTCA GAGTCCCAGG 1561 ACATTAAACT CTGCCCAACT TTCTTGTACA AAGTtggcat tataagaaag cattgcttat 1621 caatttgttg caacgaac