Construct: ORF ccsbBroadEn_00184

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF001485.1_s300c1, BRDN0000457110
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
C2 (717)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 717 C2 complement C2 NM_000063.6 100% 100%
2 human 717 C2 complement C2 NM_001282458.2 93.7% 88.3% 0_1ins115;142_169del
3 human 717 C2 complement C2 NM_001145903.3 82.4% 82.4% 45_46ins396
4 human 717 C2 complement C2 NM_001178063.2 69.4% 68.1% (many diffs)
5 human 717 C2 complement C2 NM_001282457.2 67.2% 62.8% 0_1ins505;111_112ins233
6 human 717 C2 complement C2 NM_001282459.2 41.3% 37.9% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
2325
ORF length:
2256
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG
61TTGGCACCAT GGGCCCACTG ATGGTTCTTT TTTGCCTGCT GTTCCTGTAC CCAGGTCTGG
121CAGACTCGGC TCCCTCCTGC CCTCAGAACG TGAATATCTC GGGTGGCACC TTCACCCTCA
181GCCATGGCTG GGCTCCTGGG AGCCTTCTCA CCTACTCCTG CCCCCAGGGC CTGTACCCAT
241CCCCAGCATC ACGGCTGTGC AAGAGCAGCG GACAGTGGCA GACCCCAGGA GCCACCCGGT
301CTCTGTCTAA GGCGGTCTGC AAACCTGTGC GCTGTCCAGC CCCTGTCTCC TTTGAGAATG
361GCATTTATAC CCCACGGCTG GGGTCCTATC CCGTGGGTGG CAATGTGAGC TTCGAGTGTG
421AGGATGGCTT CATATTGCGG GGCTCGCCTG TGCGTCAGTG TCGCCCCAAC GGCATGTGGG
481ATGGAGAAAC AGCTGTGTGT GATAATGGGG CTGGCCACTG CCCCAACCCA GGCATTTCAC
541TGGGCGCAGT GCGGACAGGC TTCCGCTTTG GTCATGGGGA CAAGGTCCGC TATCGCTGCT
601CCTCGAATCT TGTGCTCACG GGGTCTTCGG AGCGGGAGTG CCAGGGCAAC GGGGTCTGGA
661GTGGAACGGA GCCCATCTGC CGCCAACCCT ACTCTTATGA CTTCCCTGAG GACGTGGCCC
721CTGCCCTGGG CACTTCCTTC TCCCACATGC TTGGGGCCAC CAATCCCACC CAGAAGACAA
781AGGAAAGCCT GGGCCGTAAA ATCCAAATCC AGCGCTCTGG TCATCTGAAC CTCTACCTGC
841TCCTGGACTG TTCGCAGAGT GTGTCGGAAA ATGACTTTCT CATCTTCAAG GAGAGCGCCT
901CCCTCATGGT GGACAGGATC TTCAGCTTTG AGATCAATGT GAGCGTTGCC ATTATCACCT
961TTGCCTCAGA GCCCAAAGTC CTCATGTCTG TCCTGAACGA CAACTCCCGG GATATGACTG
1021AGGTGATCAG CAGCCTGGAA AATGCCAACT ATAAAGATCA TGAAAATGGA ACTGGGACTA
1081ACACCTATGC GGCCTTAAAC AGTGTCTATC TCATGATGAA CAACCAAATG CGACTCCTCG
1141GCATGGAAAC GATGGCCTGG CAGGAAATCC GACATGCCAT CATCCTTCTG ACAGATGGAA
1201AGTCCAATAT GGGTGGCTCT CCCAAGACAG CTGTTGACCA TATCAGAGAG ATCCTGAACA
1261TCAACCAGAA GAGGAATGAC TATCTGGACA TCTATGCCAT CGGGGTGGGC AAGCTGGATG
1321TGGACTGGAG AGAACTGAAT GAGCTAGGGT CCAAGAAGGA TGGTGAGAGG CATGCCTTCA
1381TTCTGCAGGA CACAAAGGCT CTGCACCAGG TCTTTGAACA TATGCTGGAT GTCTCCAAGC
1441TCACAGACAC CATCTGCGGG GTGGGGAACA TGTCAGCAAA CGCCTCTGAC CAGGAGAGGA
1501CACCCTGGCA TGTCACTATT AAGCCCAAGA GCCAAGAGAC CTGCCGGGGG GCCCTCATCT
1561CCGACCAATG GGTCCTGACA GCAGCTCATT GCTTCCGCGA TGGCAACGAC CACTCCCTGT
1621GGAGGGTCAA TGTGGGAGAC CCCAAATCCC AGTGGGGCAA AGAATTCCTT ATTGAGAAGG
1681CGGTGATCTC CCCAGGGTTT GATGTCTTTG CCAAAAAGAA CCAGGGAATC CTGGAGTTCT
1741ATGGTGATGA CATAGCTCTG CTGAAGCTGG CCCAGAAAGT AAAGATGTCC ACCCATGCCA
1801GGCCCATCTG CCTTCCCTGC ACGATGGAGG CCAATCTGGC TCTGCGGAGA CCTCAAGGCA
1861GCACCTGTAG GGACCATGAG AATGAACTGC TGAACAAACA GAGTGTTCCT GCTCATTTTG
1921TCGCCTTGAA TGGGAGCAAA CTGAACATTA ACCTTAAGAT GGGAGTGGAG TGGACAAGCT
1981GTGCCGAGGT TGTCTCCCAA GAAAAAACCA TGTTCCCCAA CTTGACAGAT GTCAGGGAGG
2041TGGTGACAGA CCAGTTCCTA TGCAGTGGGA CCCAGGAGGA TGAGAGTCCC TGCAAGGGAG
2101AATCTGGGGG AGCAGTTTTC CTTGAGCGGA GATTCAGGTT TTTTCAGGTG GGTCTGGTGA
2161GCTGGGGTCT TTACAACCCC TGCCTTGGCT CTGCTGACAA AAACTCCCGC AAAAGGGCCC
2221CTCGTAGCAA GGTCCCGCCG CCACGAGACT TTCACATCAA TCTCTTCCGC ATGCAGCCCT
2281GGCTGAGGCA GCACCTGGGG GATGTCCTGA ATTTTTTACC CCTCTTGCCA ACTTTCTTGT
2341ACAAAGTTGG cattataaga aagcattgct tatcaatttg ttgcaacgaa c

Download FASTA (ORF) (Full)