Construct: ORF ccsbBroadEn_00187

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF015423.1_s300c1, BRDN0000386740
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
CAPN5 (726)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 726 CAPN5 calpain 5 NM_004055.5 100% 100%
2 human 726 CAPN5 calpain 5 XM_017018223.2 100% 100%
3 human 726 CAPN5 calpain 5 XM_011545225.1 94.1% 94.1% 1_120del
4 mouse 12337 Capn5 calpain 5 NM_001301250.1 88% 92.1% (many diffs)
5 mouse 12337 Capn5 calpain 5 NM_007602.4 88% 92.1% (many diffs)
6 mouse 12337 Capn5 calpain 5 XM_006507275.3 86.2% 90.3% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1986
ORF length:
1920
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGTT CTCGTGTGTG AAGCCCTATG AGGACCAGAA CTACTCAGCC CTGAGGCGGG
121ACTGCCGGCG CAGGAAGGTG CTCTTCGAGG ACCCCCTCTT CCCCGCCACT GACGACTCAC
181TCTACTATAA GGGCACGCCG GGGCCCGCCG TCAGGTGGAA GCGACCCAAG GGCATCTGCG
241AGGACCCCCG CCTCTTTGTG GATGGCATCA GCTCCCACGA CCTGCACCAG GGCCAGGTGG
301GCAACTGCTG GTTTGTGGCA GCCTGCTCGT CACTTGCCTC CCGGGAGTCG CTGTGGCAAA
361AGGTCATCCC AGACTGGAAG GAGCAGGAAT GGGACCCCGA AAAGCCCAAC GCCTACGCGG
421GCATCTTCCA CTTCCACTTC TGGCGCTTCG GGGAATGGGT GGACGTGGTC ATCGATGACC
481GGCTGCCCAC AGTCAACAAC CAGCTCATCT ACTGCCACTC CAACTCCCGC AATGAGTTTT
541GGTGCGCCCT AGTGGAGAAG GCCTATGCCA AACTGGCAGG CTGTTACCAG GCCCTGGATG
601GAGGCAACAC AGCAGACGCA CTGGTGGACT TCACGGGTGG TGTTTCTGAG CCCATCGACC
661TGACCGAGGG TGACTTTGCC AACGATGAGA CTAAGAGGAA CCAGCTCTTT GAGCGCATGT
721TAAAGGTGCA CAGCCGGGGC GGCCTCATCA GTGCCTCCAT CAAGGCAGTG ACAGCAGCTG
781ACATGGAGGC CCGCCTGGCG TGCGGCCTGG TAAAGGGCCA CGCATACGCC GTCACTGATG
841TGCGCAAGGT GCGCCTGGGC CACGGCCTAC TGGCCTTCTT CAAGTCAGAG AAGTTGGACA
901TGATCCGCCT GCGCAACCCC TGGGGCGAGC GGGAGTGGAA CGGGCCCTGG AGTGACACCT
961CGGAGGAGTG GCAGAAAGTG AGCAAGAGTG AGCGGGAGAA GATGGGTGTG ACCGTGCAGG
1021ACGACGGTGA GTTCTGGATG ACCTTCGAGG ACGTGTGCCG GTACTTCACG GACATCATCA
1081AGTGCCGCGT GATCAACACA TCCCACCTGA GCATCCACAA GACGTGGGAG GAGGCCCGGC
1141TGCATGGCGC CTGGACGCTG CATGAGGACC CGCGACAGAA CCGCGGTGGC GGCTGCATCA
1201ACCACAAGGA CACCTTCTTC CAGAACCCAC AGTACATCTT CGAAGTCAAG AAGCCAGAAG
1261ATGAAGTCCT GATCTGCATC CAGCAGCGGC CAAAGCGGTC TACGCGCCGG GAGGGCAAGG
1321GTGAGAACCT GGCCATTGGC TTTGACATCT ACAAGGTGGA GGAGAACCGC CAGTACCGCA
1381TGCACAGCCT GCAGCACAAG GCCGCCAGCT CCATCTACAT CAACTCACGC AGCGTCTTCC
1441TGCGCACCGA CCAGCCCGAG GGCCGCTATG TCATCATCCC CACAACCTTC GAGCCAGGCC
1501ACACTGGCGA GTTCCTGCTC CGAGTCTTCA CTGATGTGCC CTCCAACTGC CGGGAGCTGC
1561GCCTGGATGA GCCCCCACAC ACCTGCTGGA GCTCCCTCTG TGGCTACCCC CAGCTGGTGA
1621CCCAGGTACA TGTCCTGGGA GCTGCTGGCC TCAAGGACTC CCCAACAGGG GCTAACTCTT
1681ATGTGATCAT CAAGTGTGAG GGAGACAAAG TCCGCTCGGC TGTGCAGAAG GGCACCTCCA
1741CACCAGAGTA CAATGTGAAA GGCATCTTCT ACCGCAAGAA GCTGAGCCAG CCCATCACTG
1801TACAGGTCTG GAACCACCGA GTGCTGAAGG ATGAATTTCT GGGCCAGGTG CACCTAAAGG
1861CTGACCCGGA CAACCTCCAG GCCCTGCATA CCCTCCACCT CCGGGACCGA AATAGCCGGC
1921AGCCCAGCAA CCTGCCAGGC ACTGTGGCCG TGCACATTCT CAGCAGCACC TCCCTCATGG
1981CTGTCTGCCC AACTTTCTTG TACAAAGTtg gcattataag aaagcattgc ttatcaattt
2041gttgcaacga ac

Download FASTA (ORF) (Full)

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