Construct: ORF ccsbBroadEn_00280

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF012864.1_s300c1, BRDN0000392681
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
CDK7 (1022)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 1022 CDK7 cyclin dependent kinase 7 NM_001799.4 100% 100%
2 human 1022 CDK7 cyclin dependent kinase 7 NM_001324069.2 87.9% 87.8% 0_1ins123;2_3delTGinsAA
3 human 1022 CDK7 cyclin dependent kinase 7 NM_001324070.2 83.5% 83.5% 126_127ins171
4 human 1022 CDK7 cyclin dependent kinase 7 NM_001324071.2 83.5% 74% 0_1ins34;125_126ins137
5 human 1022 CDK7 cyclin dependent kinase 7 NM_001324072.1 73.1% 73.1% 0_1ins279
6 human 1022 CDK7 cyclin dependent kinase 7 NM_001324074.2 73.1% 73.1% 0_1ins279
7 human 1022 CDK7 cyclin dependent kinase 7 NM_001324075.2 73.1% 73.1% 0_1ins279
8 human 1022 CDK7 cyclin dependent kinase 7 NM_001324077.1 73.1% 73.1% 0_1ins279
9 human 1022 CDK7 cyclin dependent kinase 7 NM_001324078.2 73.1% 73.1% 0_1ins279
10 human 1022 CDK7 cyclin dependent kinase 7 XM_011543094.2 66.1% 66.1% 0_1ins351
11 human 1022 CDK7 cyclin dependent kinase 7 NR_136690.2 64.4% 1_90del;497_498ins119;1010_1307del
12 mouse 12572 Cdk7 cyclin-dependent kinase 7 NM_009874.3 87.6% 95% (many diffs)
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Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1104
ORF length:
1038
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGGC TCTGGACGTG AAGTCTCGGG CAAAGCGTTA TGAGAAGCTG GACTTCCTTG
121GGGAGGGACA GTTTGCCACC GTTTACAAGG CCAGAGATAA GAACACCAAC CAAATTGTCG
181CCATTAAGAA AATCAAACTT GGACATAGAT CAGAAGCTAA AGATGGTATA AATAGAACCG
241CCTTAAGAGA GATAAAATTA TTACAGGAGC TAAGTCATCC AAATATAATT GGTCTCCTTG
301ATGCTTTTGG ACATAAATCT AATATTAGCC TTGTCTTTGA TTTTATGGAA ACTGATCTAG
361AGGTTATAAT AAAGGATAAT AGTCTTGTGC TGACACCATC ACACATCAAA GCCTACATGT
421TGATGACTCT TCAAGGATTA GAATATTTAC ATCAACATTG GATCCTACAT AGGGATCTGA
481AACCAAACAA CTTGTTGCTA GATGAAAATG GAGTTCTAAA ACTGGCAGAT TTTGGCCTGG
541CCAAATCTTT TGGGAGCCCC AATAGAGCTT ATACACATCA GGTTGTAACC AGGTGGTATC
601GGGCCCCCGA GTTACTATTT GGAGCTAGGA TGTATGGTGT AGGTGTGGAC ATGTGGGCTG
661TTGGCTGTAT ATTAGCAGAG TTACTTCTAA GGGTTCCTTT TTTGCCAGGA GATTCAGACC
721TTGATCAGCT AACAAGAATA TTTGAAACTT TGGGCACACC AACTGAGGAA CAGTGGCCGG
781ACATGTGTAG TCTTCCAGAT TATGTGACAT TTAAGAGTTT CCCTGGAATA CCTTTGCATC
841ACATCTTCAG TGCAGCAGGA GACGACTTAC TAGATCTCAT ACAAGGCTTA TTCTTATTTA
901ATCCATGTGC TCGAATTACG GCCACACAGG CACTGAAAAT GAAGTATTTC AGTAATCGGC
961CAGGGCCAAC ACCTGGATGT CAGCTGCCAA GACCAAACTG TCCAGTGGAA ACCTTAAAGG
1021AGCAATCAAA TCCAGCTTTG GCAATAAAAA GGAAAAGAAC AGAGGCCTTA GAACAAGGAG
1081GATTGCCCAA GAAACTAATT TTTTACCCAA CTTTCTTGTA CAAAGTtggc attataagaa
1141agcattgctt atcaatttgt tgcaacgaac

Download FASTA (ORF) (Full)