Construct: ORF ccsbBroadEn_00299

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF006442.1_s300c1, BRDN0000392882
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
RCBTB2 (1102)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 1102 RCBTB2 RCC1 and BTB domain contain... NM_001268.4 100% 100%
2 human 1102 RCBTB2 RCC1 and BTB domain contain... NM_001352424.2 100% 100%
3 human 1102 RCBTB2 RCC1 and BTB domain contain... NM_001352425.2 100% 100%
4 human 1102 RCBTB2 RCC1 and BTB domain contain... NM_001352429.2 97.9% 96% (many diffs)
5 human 1102 RCBTB2 RCC1 and BTB domain contain... XM_017020369.1 97% 96.6% (many diffs)
6 human 1102 RCBTB2 RCC1 and BTB domain contain... XM_017020370.1 97% 96.6% (many diffs)
7 human 1102 RCBTB2 RCC1 and BTB domain contain... NM_001286830.1 97% 95.9% (many diffs)
8 human 1102 RCBTB2 RCC1 and BTB domain contain... XM_011534894.3 97% 95.9% (many diffs)
9 human 1102 RCBTB2 RCC1 and BTB domain contain... XM_017020371.2 97% 95.9% (many diffs)
10 human 1102 RCBTB2 RCC1 and BTB domain contain... XM_017020372.1 97% 95.9% (many diffs)
11 human 1102 RCBTB2 RCC1 and BTB domain contain... NM_001286831.1 95.6% 95.6% 0_1ins72
12 human 1102 RCBTB2 RCC1 and BTB domain contain... NM_001352426.2 95.6% 95.6% 0_1ins72
13 human 1102 RCBTB2 RCC1 and BTB domain contain... XR_941470.2 69.2% (many diffs)
14 human 1102 RCBTB2 RCC1 and BTB domain contain... XM_017020374.1 55.3% 54.2% (many diffs)
15 human 1102 RCBTB2 RCC1 and BTB domain contain... XM_017020375.1 55.3% 54.2% (many diffs)
16 human 1102 RCBTB2 RCC1 and BTB domain contain... XM_017020376.1 54.7% 53.6% (many diffs)
17 human 1102 RCBTB2 RCC1 and BTB domain contain... NR_147985.2 54.3% (many diffs)
18 human 1102 RCBTB2 RCC1 and BTB domain contain... NM_001352431.1 51.5% 45.7% (many diffs)
19 human 1102 RCBTB2 RCC1 and BTB domain contain... NM_001286832.1 50.2% 44.6% 0_1ins679;103_104ins143
20 human 1102 RCBTB2 RCC1 and BTB domain contain... NM_001352427.2 50.2% 44.6% 0_1ins679;103_104ins143
21 human 1102 RCBTB2 RCC1 and BTB domain contain... NM_001352428.2 50.2% 44.6% 0_1ins679;103_104ins143
22 human 1102 RCBTB2 RCC1 and BTB domain contain... XM_017020379.1 50.2% 44.6% 0_1ins679;103_104ins143
23 human 1102 RCBTB2 RCC1 and BTB domain contain... NM_001352430.1 49.4% 42.9% (many diffs)
24 human 1102 RCBTB2 RCC1 and BTB domain contain... XR_941471.2 49.2% (many diffs)
25 human 1102 RCBTB2 RCC1 and BTB domain contain... XM_017020377.1 46.6% 44.6% (many diffs)
26 human 1102 RCBTB2 RCC1 and BTB domain contain... XR_001749469.1 42.3% (many diffs)
27 mouse 105670 Rcbtb2 regulator of chromosome con... NM_001170694.1 89.2% 95.2% (many diffs)
28 mouse 105670 Rcbtb2 regulator of chromosome con... NM_134083.4 89.2% 95.2% (many diffs)
29 mouse 105670 Rcbtb2 regulator of chromosome con... XM_006518382.3 89.2% 95.2% (many diffs)
30 mouse 105670 Rcbtb2 regulator of chromosome con... XM_006518383.2 89.2% 95.2% (many diffs)
31 mouse 105670 Rcbtb2 regulator of chromosome con... XM_006518384.1 89.2% 95.2% (many diffs)
32 mouse 105670 Rcbtb2 regulator of chromosome con... XM_006518385.3 89.2% 95.2% (many diffs)
33 mouse 105670 Rcbtb2 regulator of chromosome con... XM_011244891.2 89.2% 95.2% (many diffs)
34 mouse 105670 Rcbtb2 regulator of chromosome con... XM_006518386.2 85.4% 91.8% (many diffs)
35 mouse 105670 Rcbtb2 regulator of chromosome con... XM_011244892.2 82.2% 78.5% (many diffs)
36 mouse 105670 Rcbtb2 regulator of chromosome con... XM_006518388.2 62.5% 66.6% (many diffs)
37 mouse 105670 Rcbtb2 regulator of chromosome con... NR_033185.1 38.9% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1719
ORF length:
1653
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGGA AGAAGAACTT CCTCTTTTCT CTGGAGACAG TGGCAAGCCA GTACAGGCTA
121CTCTGTCATC TTTGAAGATG TTAGATGTGG GAAAGTGGCC AATTTTTTCC CTTTGTTCTG
181AAGAAGAACT ACAGTTAATT CGTCAGGCTT GTGTCTTTGG CAGTGCTGGC AATGAAGTTT
241TATACACTAC AGTAAATGAT GAGATTTTTG TGCTTGGCAC AAACTGCTGT GGCTGTTTGG
301GGTTAGGTGA CGTCCAGAGC ACCATTGAAC CTCGGAGACT GGATTCTTTA AATGGCAAAA
361AAATAGCCTG CCTCAGCTAT GGGAGTGGTC CACATATTGT CCTTGCAACA ACAGAAGGAG
421AAGTCTTTAC CTGGGGTCAT AATGCTTATA GCCAGCTGGG CAATGGGACA ACTAATCATG
481GTTTAGTGCC CTGTCATATC TCTACTAATC TGTCAAACAA ACAAGTCATT GAAGTTGCCT
541GTGGGTCTTA CCATTCTTTG GTGCTAACAT CTGATGGAGA GGTATTTGCC TGGGGTTATA
601ATAACTCTGG GCAGGTAGGA TCTGGATCAA CAGTTAATCA GCCAATCCCT CGAAGAGTCA
661CTGGCTGCCT ACAAAATAAA GTAGTTGTGA CCATAGCATG TGGGCAGATG TGCTGCATGG
721CAGTAGTAGA CACGGGGGAG GTCTATGTCT GGGGTTACAA CGGAAACGGG CAGCTTGGAC
781TCGGCAACAG TGGCAACCAG CCAACCCCTT GCAGAGTGGC AGCTTTGCAA GGCATCCGTG
841TCCAGAGGGT CGCCTGTGGC TACGCACACA CATTAGTATT AACAGATGAA GGCCAAGTGT
901ATGCTTGGGG CGCCAATTCT TATGGGCAGT TGGGCACTGG CAATAAAAGC AACCAGTCCT
961ATCCTACTCC TGTCACTGTG GAAAAGGACA GGATTATCGA GATTGCAGCC TGTCACTCCA
1021CACACACGTC TGCGGCCAAG ACGCAGGGTG GGCACGTGTA CATGTGGGGC CAGTGCCGGG
1081GTCAGTCCGT GATCCTCCCG CACCTCACCC ACTTCTCCTG CACTGACGAC GTGTTTGCCT
1141GCTTTGCCAC GCCCGCCGTC ACGTGGCGCC TCCTCTCCGT GGAACCTGAT GACCACCTCA
1201CAGTGGCTGA GTCACTGAAG AGGGAATTTG ACAACCCGGA CACTGCAGAC CTGAAGTTTC
1261TAGTTGATGG AAAGTACATT TATGCACATA AAGTCCTTCT CAAGATTCGA TGTGAGCATT
1321TTCGTTCGTC ATTGGAAGAT AACGAGGATG ATATTGTAGA AATGAGTGAA TTTTCATATC
1381CTGTTTACCG GGCCTTCCTG GAATACCTAT ACACAGACAG CATCAGCCTT TCTCCTGAGG
1441AGGCAGTAGG ACTGCTAGAC TTGGCTACAT TTTATAGAGA AAATCGTTTG AAAAAGCTCT
1501GCCAACAAAC TATCAAGCAA GGCATCTGCG AGGAGAATGC CATCGCTCTG CTCTCGGCTG
1561CGGTGAAGTA TGATGCACAG GATTTAGAAG AATTCTGCTT CAGGTTTTGC ATAAACCATC
1621TGACTGTAGT AACACAAACA TCAGGTTTTG CAGAAATGGA CCATGATCTC CTGAAGAACT
1681TTATCAGCAA AGCAAGCAGA GTTGGAGCCT TTAAAAATTG CCCAACTTTC TTGTACAAAG
1741Ttggcattat aagaaagcat tgcttatcaa tttgttgcaa cgaac

Download FASTA (ORF) (Full)