Construct: ORF ccsbBroadEn_00335
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF000714.1_s300c1, BRDN0000398434
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- CMKLR1 (1240)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 1240 | CMKLR1 | chemerin chemokine-like rec... | NM_001142343.2 | 100% | 100% | |
| 2 | human | 1240 | CMKLR1 | chemerin chemokine-like rec... | NM_001142344.2 | 100% | 100% | |
| 3 | human | 1240 | CMKLR1 | chemerin chemokine-like rec... | NM_001142345.1 | 100% | 100% | |
| 4 | human | 1240 | CMKLR1 | chemerin chemokine-like rec... | NM_004072.3 | 99.4% | 99.4% | 0_1insATGAGA |
| 5 | human | 1240 | CMKLR1 | chemerin chemokine-like rec... | XM_017018820.2 | 99.4% | 99.4% | 0_1insATGAGA |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 1188
- ORF length:
- 1119
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG 61 TTGGCACCAT GAGAATGGAG GATGAAGATT ACAACACTTC CATCAGTTAC GGTGATGAAT 121 ACCCTGATTA TTTAGACTCC ATTGTGGTTT TGGAGGACTT ATCCCCCTTG GAAGCCAGGG 181 TGACCAGGAT CTTCCTGGTG GTGGTCTACA GCATCGTCTG CTTCCTCGGG ATTCTGGGCA 241 ATGGTCTGGT GATCATCATT GCCACCTTCA AGATGAAGAA GACAGTGAAC ATGGTCTGGT 301 TCCTCAACCT GGCAGTGGCA GATTTCCTGT TCAACGTCTT CCTCCCAATC CATATCACCT 361 ATGCCGCCAT GGACTACCAC TGGGTTTTCG GGACAGCCAT GTGCAAGATC AGCAACTTCC 421 TTCTCATCCA CAACATGTTC ACCAGCGTCT TCCTGCTGAC CATCATCAGC TCTGACCGCT 481 GCATCTCTGT GCTCCTCCCT GTCTGGTCCC AGAACCACCG CAGCGTTCGC CTGGCTTACA 541 TGGCCTGCAT GGTCATCTGG GTCCTGGCTT TCTTCTTGAG TTCCCCATCT CTCGTCTTCC 601 GGGACACAGC CAACCTGCAT GGGAAAATAT CCTGCTTCAA CAACTTCAGC CTGTCCACAC 661 CTGGGTCTTC CTCGTGGCCC ACTCACTCCC AAATGGACCC TGTGGGGTAT AGCCGGCACA 721 TGGTGGTGAC TGTCACCCGC TTCCTCTGTG GCTTCCTGGT CCCAGTCCTC ATCATCACAG 781 CTTGCTACCT CACCATCGTG TGCAAACTGC AGCGCAACCG CCTGGCCAAG ACCAAGAAGC 841 CCTTCAAGAT TATTGTGACC ATCATCATTA CCTTCTTCCT CTGCTGGTGC CCCTACCACA 901 CACTCAACCT CCTAGAGCTC CACCACACTG CCATGCCTGG CTCTGTCTTC AGCCTGGGTT 961 TGCCCCTGGC CACTGCCCTT GCCATTGCCA ACAGCTGCAT GAACCCCATT CTGTATGTTT 1021 TCATGGGTCA GGACTTCAAG AAGTTCAAGG TGGCCCTCTT CTCTCGCCTG GTCAATGCTC 1081 TAAGTGAAGA TACAGGCCAC TCTTCCTACC CCAGCCATAG AAGCTTTACC AAGATGTCAT 1141 CAATGAATGA GAGGACTTCT ATGAATGAGA GGGAGACCGG CATGCTTTTG CCAACTTTCT 1201 TGTACAAAGT tggcattata agaaagcatt gcttatcaat ttgttgcaac gaac