Construct: ORF ccsbBroadEn_00342

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF012610.1_s300c1, BRDN0000395448
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
COL8A1 (1295)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 1295 COL8A1 collagen type VIII alpha 1 ... NM_001850.5 100% 100%
2 human 1295 COL8A1 collagen type VIII alpha 1 ... NM_020351.4 100% 100%
3 mouse 12837 Col8a1 collagen, type VIII, alpha 1 NM_007739.2 87.9% 93.2% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
2298
ORF length:
2232
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGGC TGTGCTGCCT GGCCCTCTGC AGCTGCTGGG AGTGCTGCTT ACCATTTCCC
121TGAGTTCCAT CAGGCTCATT CAGGCTGGTG CCTACTATGG GATCAAGCCG CTGCCACCTC
181AAATTCCTCC TCAGATGCCA CCACAAATTC CACAATACCA GCCCCTGGGT CAGCAAGTAC
241CTCACATGCC TTTGGCCAAA GATGGCCTTG CCATGGGCAA GGAGATGCCC CACTTGCAGT
301ATGGCAAAGA GTATCCACAC CTACCCCAAT ATATGAAGGA AATTCAACCG GCGCCAAGAA
361TGGGCAAGGA AGCCGTACCC AAGAAAGGCA AAGAAATACC ATTAGCCAGT TTACGAGGGG
421AACAAGGTCC CCGTGGAGAG CCTGGCCCAA GAGGACCACC TGGGCCCCCT GGTTTGCCAG
481GTCATGGGAT ACCTGGAATT AAAGGAAAAC CAGGGCCACA GGGATATCCA GGAGTTGGAA
541AGCCAGGTAT GCCTGGAATG CCAGGGAAGC CAGGAGCCAT GGGCATGCCT GGGGCAAAAG
601GAGAAATTGG ACAGAAAGGG GAAATTGGGC CTATGGGGAT CCCAGGACCA CAAGGACCTC
661CAGGGCCTCA TGGACTTCCT GGCATTGGGA AGCCAGGTGG GCCAGGGTTA CCAGGGCAAC
721CAGGACCAAA GGGTGATCGA GGACCCAAAG GACTACCAGG ACCTCAAGGC CTTCGGGGTC
781CTAAAGGAGA CAAGGGCTTC GGGATGCCAG GTGCGCCAGG TGTAAAGGGG CCTCCAGGGA
841TGCACGGCCC TCCCGGCCCT GTTGGACTGC CAGGAGTGGG CAAACCAGGA GTGACAGGCT
901TCCCTGGGCC CCAGGGCCCC CTGGGAAAGC CAGGGGCTCC AGGAGAACCT GGGCCACAAG
961GCCCTATTGG GGTACCGGGG GTTCAAGGAC CTCCTGGGAT ACCCGGAATT GGAAAGCCAG
1021GCCAGGATGG GATCCCAGGC CAGCCAGGAT TTCCAGGTGG CAAAGGGGAG CAAGGACTGC
1081CAGGGCTACC AGGACCCCCA GGCCTTCCAG GGATTGGGAA ACCAGGCTTC CCAGGACCCA
1141AAGGTGACCG GGGCATGGGA GGTGTTCCTG GGGCTCTTGG ACCAAGAGGG GAGAAAGGAC
1201CAATAGGTGC CCCAGGAATA GGGGGTCCTC CAGGAGAGCC AGGCCTGCCT GGAATCCCAG
1261GTCCTATGGG CCCTCCAGGT GCTATTGGTT TTCCTGGACC CAAAGGAGAA GGTGGGATTG
1321TAGGGCCACA GGGGCCACCA GGTCCCAAGG GTGAGCCAGG GCTTCAAGGC TTCCCAGGAA
1381AGCCAGGTTT CCTTGGTGAA GTAGGGCCTC CTGGCATGAG GGGTTTGCCA GGTCCCATAG
1441GGCCCAAGGG GGAAGCTGGG CAAAAAGGTG TACCAGGACT CCCTGGTGTT CCAGGGCTTC
1501TCGGACCTAA GGGAGAGCCA GGAATCCCAG GGGATCAGGG TTTACAGGGC CCCCCAGGTA
1561TCCCAGGGAT TGGGGGCCCT AGTGGCCCCA TTGGACCACC TGGGATTCCA GGCCCCAAAG
1621GGGAGCCGGG CCTCCCAGGG CCCCCTGGGT TCCCTGGTAT AGGGAAACCC GGAGTGGCAG
1681GACTTCATGG CCCCCCAGGG AAGCCTGGTG CCCTTGGTCC TCAAGGCCAG CCTGGCCTTC
1741CAGGACCCCC AGGCCCTCCA GGACCTCCAG GACCCCCAGC TGTGATGCCC CCTACACCAC
1801CACCCCAGGG AGAGTATCTG CCAGATATGG GGCTGGGAAT TGATGGCGTG AAACCCCCCC
1861ATGCCTACGG GGCTAAGAAA GGCAAGAATG GAGGGCCAGC CTATGAGATG CCTGCATTTA
1921CCGCCGAGCT AACCGCACCT TTCCCACCGG TGGGGGCCCC AGTGAAGTTT AACAAACTGC
1981TGTATAACGG CAGACAGAAC TACAACCCGC AGACAGGCAT CTTCACCTGT GAGGTCCCTG
2041GTGTCTACTA CTTTGCATAC CACGTTCACT GCAAGGGGGG CAACGTGTGG GTTGCTCTAT
2101TCAAGAACAA CGAGCCCGTG ATGTACACGT ACGACGAGTA CAAAAAGGGC TTCCTGGACC
2161AGGCATCTGG GAGTGCAGTG CTGCTGCTCA GGCCCGGAGA CCGGGTGTTC CTCCAGATGC
2221CCTCAGAACA GGCTGCAGGA CTGTATGCCG GGCAGTATGT CCACTCCTCC TTTTCAGGAT
2281ATTTATTGTA TCCCATGTAC CCAACTTTCT TGTACAAAGT tggcattata agaaagcatt
2341gcttatcaat ttgttgcaac gaac

Download FASTA (ORF) (Full)