Construct: ORF ccsbBroadEn_00389
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF018189.1_s300c1, BRDN0000390433
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- CTBP1 (1487)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 1487 | CTBP1 | C-terminal binding protein 1 | NM_001012614.2 | 100% | 100% | |
| 2 | human | 1487 | CTBP1 | C-terminal binding protein 1 | XM_017007764.1 | 100% | 100% | |
| 3 | human | 1487 | CTBP1 | C-terminal binding protein 1 | XM_017007765.2 | 100% | 100% | |
| 4 | human | 1487 | CTBP1 | C-terminal binding protein 1 | XM_017007766.2 | 100% | 100% | |
| 5 | human | 1487 | CTBP1 | C-terminal binding protein 1 | XM_017007767.2 | 100% | 100% | |
| 6 | human | 1487 | CTBP1 | C-terminal binding protein 1 | XM_005272263.5 | 99.7% | 99.7% | 1105_1107delAGC |
| 7 | human | 1487 | CTBP1 | C-terminal binding protein 1 | XM_011513395.3 | 99.7% | 99.7% | 1105_1107delAGC |
| 8 | human | 1487 | CTBP1 | C-terminal binding protein 1 | XM_011513396.3 | 99.7% | 99.7% | 1105_1107delAGC |
| 9 | human | 1487 | CTBP1 | C-terminal binding protein 1 | XM_017007762.2 | 99.7% | 99.7% | 1105_1107delAGC |
| 10 | human | 1487 | CTBP1 | C-terminal binding protein 1 | XM_017007763.2 | 99.7% | 99.7% | 1105_1107delAGC |
| 11 | human | 1487 | CTBP1 | C-terminal binding protein 1 | NM_001328.3 | 97.5% | 97% | 4_19del;23_39del |
| 12 | human | 1487 | CTBP1 | C-terminal binding protein 1 | XM_005272261.3 | 97.2% | 96.8% | 4_19del;23_39del;1138_1140delAGC |
| 13 | human | 1487 | CTBP1 | C-terminal binding protein 1 | XM_024453899.1 | 85.1% | 85.1% | 0_1ins189;916_918delAGC |
| 14 | mouse | 13016 | Ctbp1 | C-terminal binding protein 1 | NM_001198860.1 | 88.5% | 98.8% | (many diffs) |
| 15 | mouse | 13016 | Ctbp1 | C-terminal binding protein 1 | NM_001198861.1 | 88.3% | 98.6% | (many diffs) |
| 16 | mouse | 13016 | Ctbp1 | C-terminal binding protein 1 | NM_001198859.1 | 85.8% | 95.9% | (many diffs) |
| 17 | mouse | 13016 | Ctbp1 | C-terminal binding protein 1 | NM_013502.3 | 85.6% | 95.6% | (many diffs) |
| 18 | mouse | 13016 | Ctbp1 | C-terminal binding protein 1 | NM_001310535.1 | 74.9% | 84.1% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 1353
- ORF length:
- 1287
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGTC AGGCGTCCGA CCTCCGATCA TGAACGGGCC CCTGCACCCG CGGCCCCTGG 121 TGGCATTGCT GGATGGCCGG GACTGCACAG TGGAGATGCC CATCCTGAAG GACGTGGCCA 181 CTGTGGCCTT CTGCGACGCG CAGTCCACGC AGGAGATCCA TGAGAAGGTC CTGAACGAGG 241 CTGTGGGGGC CCTGATGTAC CACACCATCA CTCTCACCAG GGAGGACCTG GAGAAGTTCA 301 AAGCCCTCCG CATCATCGTC CGGATTGGCA GTGGTTTTGA CAACATCGAC ATCAAGTCGG 361 CCGGGGATTT AGGCATTGCC GTCTGCAACG TGCCCGCGGC GTCTGTGGAG GAGACGGCCG 421 ACTCGACGCT GTGCCACATC CTGAACCTGT ACCGGCGGGC CACCTGGCTG CACCAGGCGC 481 TGCGGGAGGG CACACGAGTC CAGAGCGTCG AGCAGATCCG CGAGGTGGCG TCCGGCGCTG 541 CCAGGATCCG CGGGGAGACC TTGGGCATCA TCGGACTTGG TCGCGTGGGG CAGGCAGTGG 601 CGCTGCGGGC CAAGGCCTTC GGCTTCAACG TGCTCTTCTA CGACCCTTAC TTGTCGGATG 661 GCGTGGAGCG GGCGCTGGGG CTGCAGCGTG TCAGCACCCT GCAGGACCTG CTCTTCCACA 721 GCGACTGCGT GACCCTGCAC TGCGGCCTCA ACGAGCACAA CCACCACCTC ATCAACGACT 781 TCACCGTCAA GCAGATGAGA CAAGGGGCCT TCCTGGTGAA CACAGCCCGG GGTGGCCTGG 841 TGGATGAGAA GGCGCTGGCC CAGGCCCTGA AGGAGGGCCG GATCCGCGGC GCGGCCCTGG 901 ATGTGCACGA GTCGGAACCC TTCAGCTTTA GCCAGGGCCC TCTGAAGGAT GCACCCAACC 961 TCATCTGCAC CCCCCATGCT GCATGGTACA GCGAGCAGGC ATCCATCGAG ATGCGAGAGG 1021 AGGCGGCACG GGAGATCCGC AGAGCCATCA CAGGCCGGAT CCCAGACAGC CTGAAGAACT 1081 GTGTCAACAA GGACCATCTG ACAGCCGCCA CCCACTGGGC CAGCATGGAC CCCGCCGTCG 1141 TGCACCCTGA GCTCAATGGG GCTGCCTATA GGTACCCTCC GGGCGTGGTG GGCGTGGCCC 1201 CCACTGGCAT CCCAGCTGCT GTGGAAGGTA TCGTCCCCAG CGCCATGTCC CTGTCCCACG 1261 GCCTGCCCCC TGTGGCCCAC CCGCCCCACG CCCCTTCTCC TGGCCAAACC GTCAAGCCCG 1321 AGGCGGATAG AGACCACGCC AGTGACCAGT TGTACCCAAC TTTCTTGTAC AAAGTtggca 1381 ttataagaaa gcattgctta tcaatttgtt gcaacgaac