Construct: ORF ccsbBroadEn_00389

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF018189.1_s300c1, BRDN0000390433
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
CTBP1 (1487)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 1487 CTBP1 C-terminal binding protein 1 NM_001012614.2 100% 100%
2 human 1487 CTBP1 C-terminal binding protein 1 XM_017007764.1 100% 100%
3 human 1487 CTBP1 C-terminal binding protein 1 XM_017007765.2 100% 100%
4 human 1487 CTBP1 C-terminal binding protein 1 XM_017007766.2 100% 100%
5 human 1487 CTBP1 C-terminal binding protein 1 XM_017007767.2 100% 100%
6 human 1487 CTBP1 C-terminal binding protein 1 XM_005272263.5 99.7% 99.7% 1105_1107delAGC
7 human 1487 CTBP1 C-terminal binding protein 1 XM_011513395.3 99.7% 99.7% 1105_1107delAGC
8 human 1487 CTBP1 C-terminal binding protein 1 XM_011513396.3 99.7% 99.7% 1105_1107delAGC
9 human 1487 CTBP1 C-terminal binding protein 1 XM_017007762.2 99.7% 99.7% 1105_1107delAGC
10 human 1487 CTBP1 C-terminal binding protein 1 XM_017007763.2 99.7% 99.7% 1105_1107delAGC
11 human 1487 CTBP1 C-terminal binding protein 1 NM_001328.3 97.5% 97% 4_19del;23_39del
12 human 1487 CTBP1 C-terminal binding protein 1 XM_005272261.3 97.2% 96.8% 4_19del;23_39del;1138_1140delAGC
13 human 1487 CTBP1 C-terminal binding protein 1 XM_024453899.1 85.1% 85.1% 0_1ins189;916_918delAGC
14 mouse 13016 Ctbp1 C-terminal binding protein 1 NM_001198860.1 88.5% 98.8% (many diffs)
15 mouse 13016 Ctbp1 C-terminal binding protein 1 NM_001198861.1 88.3% 98.6% (many diffs)
16 mouse 13016 Ctbp1 C-terminal binding protein 1 NM_001198859.1 85.8% 95.9% (many diffs)
17 mouse 13016 Ctbp1 C-terminal binding protein 1 NM_013502.3 85.6% 95.6% (many diffs)
18 mouse 13016 Ctbp1 C-terminal binding protein 1 NM_001310535.1 74.9% 84.1% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1353
ORF length:
1287
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGTC AGGCGTCCGA CCTCCGATCA TGAACGGGCC CCTGCACCCG CGGCCCCTGG
121TGGCATTGCT GGATGGCCGG GACTGCACAG TGGAGATGCC CATCCTGAAG GACGTGGCCA
181CTGTGGCCTT CTGCGACGCG CAGTCCACGC AGGAGATCCA TGAGAAGGTC CTGAACGAGG
241CTGTGGGGGC CCTGATGTAC CACACCATCA CTCTCACCAG GGAGGACCTG GAGAAGTTCA
301AAGCCCTCCG CATCATCGTC CGGATTGGCA GTGGTTTTGA CAACATCGAC ATCAAGTCGG
361CCGGGGATTT AGGCATTGCC GTCTGCAACG TGCCCGCGGC GTCTGTGGAG GAGACGGCCG
421ACTCGACGCT GTGCCACATC CTGAACCTGT ACCGGCGGGC CACCTGGCTG CACCAGGCGC
481TGCGGGAGGG CACACGAGTC CAGAGCGTCG AGCAGATCCG CGAGGTGGCG TCCGGCGCTG
541CCAGGATCCG CGGGGAGACC TTGGGCATCA TCGGACTTGG TCGCGTGGGG CAGGCAGTGG
601CGCTGCGGGC CAAGGCCTTC GGCTTCAACG TGCTCTTCTA CGACCCTTAC TTGTCGGATG
661GCGTGGAGCG GGCGCTGGGG CTGCAGCGTG TCAGCACCCT GCAGGACCTG CTCTTCCACA
721GCGACTGCGT GACCCTGCAC TGCGGCCTCA ACGAGCACAA CCACCACCTC ATCAACGACT
781TCACCGTCAA GCAGATGAGA CAAGGGGCCT TCCTGGTGAA CACAGCCCGG GGTGGCCTGG
841TGGATGAGAA GGCGCTGGCC CAGGCCCTGA AGGAGGGCCG GATCCGCGGC GCGGCCCTGG
901ATGTGCACGA GTCGGAACCC TTCAGCTTTA GCCAGGGCCC TCTGAAGGAT GCACCCAACC
961TCATCTGCAC CCCCCATGCT GCATGGTACA GCGAGCAGGC ATCCATCGAG ATGCGAGAGG
1021AGGCGGCACG GGAGATCCGC AGAGCCATCA CAGGCCGGAT CCCAGACAGC CTGAAGAACT
1081GTGTCAACAA GGACCATCTG ACAGCCGCCA CCCACTGGGC CAGCATGGAC CCCGCCGTCG
1141TGCACCCTGA GCTCAATGGG GCTGCCTATA GGTACCCTCC GGGCGTGGTG GGCGTGGCCC
1201CCACTGGCAT CCCAGCTGCT GTGGAAGGTA TCGTCCCCAG CGCCATGTCC CTGTCCCACG
1261GCCTGCCCCC TGTGGCCCAC CCGCCCCACG CCCCTTCTCC TGGCCAAACC GTCAAGCCCG
1321AGGCGGATAG AGACCACGCC AGTGACCAGT TGTACCCAAC TTTCTTGTAC AAAGTtggca
1381ttataagaaa gcattgctta tcaatttgtt gcaacgaac

Download FASTA (ORF) (Full)