Construct: ORF ccsbBroadEn_00513

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF012047.1_s300c1, BRDN0000389810
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
ERCC3 (2071)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 2071 ERCC3 ERCC excision repair 3, TFI... NM_000122.2 100% 100%
2 human 2071 ERCC3 ERCC excision repair 3, TFI... XM_011510794.2 99.2% 99.2% 658_675del
3 human 2071 ERCC3 ERCC excision repair 3, TFI... NM_001303416.2 91.8% 91.8% 0_1ins192
4 human 2071 ERCC3 ERCC excision repair 3, TFI... NM_001303418.2 91.8% 91.8% 0_1ins192
5 human 2071 ERCC3 ERCC excision repair 3, TFI... XM_017003583.1 80.5% 80.5% 0_1ins456
6 human 2071 ERCC3 ERCC excision repair 3, TFI... XM_011510795.1 79.9% 79.9% 0_1ins456;202_219del
7 mouse 13872 Ercc3 excision repair cross-compl... NM_133658.1 87.3% 95.7% (many diffs)
8 mouse 13872 Ercc3 excision repair cross-compl... XM_006525636.2 72.7% 69.4% (many diffs)
9 mouse 13872 Ercc3 excision repair cross-compl... XR_385973.1 72.6% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
2412
ORF length:
2346
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGGG CAAAAGAGAC CGAGCGGACC GCGACAAGAA GAAATCCAGG AAGCGGCACT
121ATGAGGATGA AGAGGATGAT GAAGAGGACG CCCCGGGGAA CGACCCTCAG GAAGCGGTTC
181CCTCGGCGGC GGGGAAGCAG GTGGATGAGT CAGGCACCAA AGTGGATGAA TATGGAGCCA
241AGGACTACAG GCTGCAAATG CCGCTGAAGG ACGACCACAC CTCCAGGCCC CTCTGGGTGG
301CTCCCGATGG CCATATCTTC TTGGAAGCCT TCTCTCCAGT TTACAAATAT GCCCAAGACT
361TCTTGGTGGC TATTGCAGAG CCAGTGTGCC GACCAACCCA TGTGCATGAG TACAAACTAA
421CTGCCTACTC CTTGTATGCA GCTGTCAGCG TTGGGCTGCA AACCAGTGAC ATCACCGAGT
481ACCTCAGGAA GCTCAGCAAG ACTGGAGTCC CTGATGGAAT TATGCAGTTT ATTAAGTTGT
541GTACTGTCAG CTATGGAAAA GTCAAGCTGG TCTTGAAGCA CAACAGATAC TTCGTTGAAA
601GTTGCCACCC TGATGTAATC CAGCATCTTC TCCAGGACCC CGTGATCCGA GAATGCCGCT
661TAAGAAACTC TGAAGGGGAG GCCACTGAGC TCATCACAGA GACTTTCACA AGCAAATCTG
721CCATTTCTAA GACTGCTGAA AGCAGTGGTG GGCCCTCCAC TTCCCGAGTG ACAGATCCAC
781AGGGTAAATC TGACATCCCC ATGGACCTGT TTGACTTCTA TGAGCAAATG GACAAGGATG
841AAGAAGAAGA AGAAGAGACA CAGACAGTGT CTTTTGAAGT CAAGCAGGAA ATGATTGAGG
901AACTCCAGAA ACGTTGCATC CACCTGGAGT ACCCTCTGTT GGCAGAATAT GACTTCCGGA
961ATGATTCTGT CAACCCTGAT ATCAACATTG ACCTAAAGCC CACAGCTGTC CTCAGACCCT
1021ATCAGGAGAA GAGCTTGCGA AAGATGTTTG GAAACGGGCG TGCACGTTCG GGGGTCATTG
1081TTCTTCCCTG CGGTGCTGGA AAGTCCCTGG TTGGTGTGAC TGCTGCATGC ACTGTCAGAA
1141AACGCTGTCT GGTGCTGGGC AACTCAGCTG TTTCTGTGGA GCAGTGGAAA GCCCAGTTCA
1201AGATGTGGTC CACCATTGAC GACAGCCAGA TCTGCCGGTT CACCTCCGAT GCCAAGGACA
1261AGCCCATCGG CTGCTCCGTT GCCATTAGCA CCTACTCCAT GCTGGGCCAC ACCACCAAAA
1321GGTCCTGGGA GGCCGAGCGA GTCATGGAGT GGCTCAAGAC CCAGGAGTGG GGCCTCATGA
1381TCCTGGATGA AGTGCACACC ATACCAGCCA AGATGTTCCG AAGGGTGCTC ACCATCGTGC
1441AGGCCCACTG TAAGCTGGGT TTGACTGCGA CCCTCGTCCG CGAAGATGAC AAAATTGTGG
1501ATTTAAATTT TCTGATTGGG CCTAAGCTCT ACGAAGCCAA CTGGATGGAG CTGCAGAATA
1561ATGGCTACAT CGCCAAAGTC CAGTGTGCTG AGGTCTGGTG CCCTATGTCT CCTGAATTTT
1621ACCGGGAATA TGTGGCAATC AAAACCAAGA AACGAATCTT GCTGTACACC ATGAACCCCA
1681ACAAATTTAG AGCTTGCCAG TTTCTGATCA AGTTTCATGA AAGGAGGAAT GACAAGATTA
1741TTGTCTTTGC TGACAATGTG TTTGCCCTAA AGGAATATGC CATTCGACTG AACAAACCCT
1801ATATCTACGG ACCTACGTCT CAGGGGGAAA GGATGCAAAT TCTCCAGAAT TTCAAGCACA
1861ACCCCAAAAT TAACACCATC TTCATATCCA AGGTAGGTGA CACTTCGTTT GATCTGCCGG
1921AAGCAAATGT CCTCATTCAG ATCTCATCCC ATGGTGGCTC CAGGCGTCAG GAAGCCCAAA
1981GGCTAGGGCG GGTGCTTCGA GCTAAAAAAG GGATGGTTGC AGAAGAGTAC AATGCCTTTT
2041TCTACTCACT GGTATCCCAG GACACACAGG AAATGGCTTA CTCAACCAAG CGGCAGAGAT
2101TCTTGGTAGA TCAAGGTTAT AGCTTCAAGG TGATCACGAA ACTCGCTGGC ATGGAGGAGG
2161AAGACTTGGC GTTTTCGACA AAAGAAGAGC AACAGCAGCT CTTACAGAAA GTCCTGGCAG
2221CCACTGACCT GGATGCCGAG GAGGAGGTGG TGGCTGGGGA ATTTGGCTCC AGATCCAGCC
2281AGGCATCTCG GCGCTTTGGC ACCATGAGTT CTATGTCTGG GGCCGACGAC ACTGTGTACA
2341TGGAGTACCA CTCATCGCGG AGCAAGGCGC CCAGCAAACA TGTACACCCG CTCTTCAAGC
2401GCTTTAGGAA ATGCCCAACT TTCTTGTACA AAGTtggcat tataagaaag cattgcttat
2461caatttgttg caacgaac

Download FASTA (ORF) (Full)