Construct: ORF ccsbBroadEn_00539
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF006688.1_s300c1, BRDN0000391773
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- FANCG (2189)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 2189 | FANCG | FA complementation group G | NM_004629.1 | 100% | 100% |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 1932
- ORF length:
- 1866
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGTC CCGCCAGACC ACCTCTGTGG GCTCCAGCTG CCTGGACCTG TGGAGGGAAA 121 AGAATGACCG GCTCGTTCGA CAGGCCAAGG TGGCTCAGAA CTCCGGTCTG ACTCTGAGGC 181 GACAGCAGTT GGCTCAGGAT GCACTGGAAG GGCTCAGAGG GCTCCTCCAT AGTCTGCAAG 241 GGCTCCCTGC AGCTGTTCCT GTTCTTCCCT TGGAGCTGAC TGTCACCTGC AACTTCATTA 301 TCCTGAGGGC AAGCTTGGCC CAGGGTTTCA CAGAGGATCA GGCCCAGGAT ATCCAGCGGA 361 GCCTAGAGAG AGTGCTGGAG ACACAGGAGC AGCAGGGGCC CAGGTTGGAA CAGGGGCTCA 421 GGGAGCTGTG GGACTCTGTC CTTCGTGCTT CCTGCCTTCT GCCGGAGCTG CTGTCTGCCC 481 TGCACCGCCT GGTTGGCCTG CAGGCTGCCC TCTGGTTGAG TGCTGACCGT CTTGGGGACC 541 TGGCCTTGTT ACTAGAGACC CTGAATGGCA GCCAGAGTGG AGCCTCTAAG GATCTGCTGT 601 TACTTCTGAA AACTTGGAGT CCCCCAGCTG AGGAATTAGA TGCTCCATTG ACCCTGCAGG 661 ATGCCCAGGG ATTGAAGGAT GTCCTCCTGA CAGCATTTGC CTACCGCCAA GGTCTCCAGG 721 AGCTGATCAC AGGGAACCCA GACAAGGCAC TAAGCAGCCT TCATGAAGCG GCCTCAGGCC 781 TGTGTCCACG GCCTGTGTTG GTCCAGGTGT ACACAGCACT GGGGTCCTGT CACCGTAAGA 841 TGGGAAATCC ACAGAGAGCA CTGTTGTACT TGGTTGCAGC CCTGAAAGAG GGATCAGCCT 901 GGGGTCCTCC ACTTCTGGAG GCCTCTAGGC TCTATCAGCA ACTGGGGGAC ACAACAGCAG 961 AGCTGGAGAG TCTGGAGCTG CTAGTTGAGG CCTTGAATGT CCCATGCAGT TCCAAAGCCC 1021 CGCAGTTTCT CATTGAGGTA GAATTACTAC TGCCACCACC TGACCTAGCC TCACCCCTTC 1081 ATTGTGGCAC TCAGAGCCAG ACCAAGCACA TACTAGCAAG CAGGTGCCTA CAGACGGGGA 1141 GGGCAGGAGA CGCTGCAGAG CATTACTTGG ACCTGCTGGC CCTGTTGCTG GATAGCTCGG 1201 AGCCAAGGTT CTCCCCACCC CCCTCCCCTC CAGGGCCCTG TATGCCTGAG GTGTTTTTGG 1261 AGGCAGCGGT AGCACTGATC CAGGCAGGCA GAGCCCAAGA TGCCTTGACT CTATGTGAGG 1321 AGTTGCTCAG CCGCACATCA TCTCTGCTAC CCAAGATGTC CCGGCTGTGG GAAGATGCCA 1381 GAAAAGGAAC CAAGGAACTG CCATACTGCC CACTCTGGGT CTCTGCCACC CACCTGCTTC 1441 AGGGCCAGGC CTGGGTTCAA CTGGGTGCCC AAAAAGTGGC AATTAGTGAA TTTAGCAGGT 1501 GCCTCGAGCT GCTCTTCCGG GCCACACCTG AGGAAAAAGA ACAAGGGGCA GCTTTCAACT 1561 GTGAGCAGGG ATGTAAGTCA GATGCGGCAC TGCAGCAGCT TCGGGCAGCC GCCCTAATTA 1621 GTCGTGGACT GGAATGGGTA GCCAGCGGCC AGGATACCAA AGCCTTACAG GACTTCCTCC 1681 TCAGTGTGCA GATGTGCCCA GGTAATCGAG ACACTTACTT TCACCTGCTT CAGACTCTGA 1741 AGAGGCTAGA TCGGAGGGAT GAGGCCACTG CACTCTGGTG GAGGCTGGAG GCCCAAACTA 1801 AGGGGTCACA TGAAGATGCT CTGTGGTCTC TCCCCCTGTA CCTAGAAAGC TATTTGAGCT 1861 GGATCCGTCC CTCTGATCGT GACGCCTTCC TTGAAGAATT TCGGACATCT CTGCCAAAGT 1921 CTTGTGACCT GTACCCAACT TTCTTGTACA AAGTtggcat tataagaaag cattgcttat 1981 caatttgttg caacgaac