Construct: ORF ccsbBroadEn_00541

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF010043.1_s300c1, BRDN0000396592
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
EFEMP1 (2202)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 2202 EFEMP1 EGF containing fibulin extr... NM_001039348.3 100% 100%
2 human 2202 EFEMP1 EGF containing fibulin extr... NM_001039349.3 100% 100%
3 human 2202 EFEMP1 EGF containing fibulin extr... XM_024452755.1 100% 100%
4 human 2202 EFEMP1 EGF containing fibulin extr... XM_024452756.1 100% 100%
5 human 2202 EFEMP1 EGF containing fibulin extr... XM_017003586.2 83.7% 83.7% 638_639ins240
6 human 2202 EFEMP1 EGF containing fibulin extr... XM_024452757.1 83.7% 83.7% 638_639ins240
7 human 2202 EFEMP1 EGF containing fibulin extr... XM_005264205.4 66.2% 66.2% 1_390del;1028_1029ins240
8 mouse 216616 Efemp1 epidermal growth factor-con... NM_146015.2 88.8% 94.5% (many diffs)
9 mouse 216616 Efemp1 epidermal growth factor-con... XM_006514660.1 88.8% 94.5% (many diffs)
10 mouse 216616 Efemp1 epidermal growth factor-con... XM_011243695.1 81.6% 86.6% (many diffs)
11 mouse 216616 Efemp1 epidermal growth factor-con... XM_011243696.1 65.9% 70.5% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1545
ORF length:
1479
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGTT GAAAGCCCTT TTCCTAACTA TGCTGACTCT GGCGCTGGTC AAGTCACAGG
121ACACCGAAGA AACCATCACG TACACGCAAT GCACTGACGG ATATGAGTGG GATCCTGTGA
181GACAGCAATG CAAAGATATT GATGAATGTG ACATTGTCCC AGACGCTTGT AAAGGTGGAA
241TGAAGTGTGT CAACCACTAT GGAGGATACC TCTGCCTTCC GAAAACAGCC CAGATTATTG
301TCAATAATGA ACAGCCTCAG CAGGAAACAC AACCAGCAGA AGGAACCTCA GGGGCAACCA
361CCGGGGTTGT AGCTGCCAGC AGCATGGCAA CCAGTGGAGT GTTGCCCGGG GGTGGTTTTG
421TGGCCAGTGC TGCTGCAGTC GCAGGCCCTG AAATGCAGAC TGGCCGAAAT AACTTTGTCA
481TCCGGCGGAA CCCAGCTGAC CCTCAGCGCA TTCCCTCCAA CCCTTCCCAC CGTATCCAGT
541GTGCAGCAGG CTACGAGCAA AGTGAACACA ACGTGTGCCA AGACATAGAC GAGTGCACTG
601CAGGGACGCA CAACTGTAGA GCAGACCAAG TGTGCATCAA TTTACGGGGA TCCTTTGCAT
661GTCAGTGCCC TCCTGGATAT CAGAAGCGAG GGGAGCAGTG CGTAGACATA GATGAATGTA
721CCATCCCTCC ATATTGCCAC CAAAGATGCG TGAATACACC AGGCTCATTT TATTGCCAGT
781GCAGTCCTGG GTTTCAATTG GCAGCAAACA ACTATACCTG CGTAGATATA AATGAATGTG
841ATGCCAGCAA TCAATGTGCT CAGCAGTGCT ACAACATTCT TGGTTCATTC ATCTGTCAGT
901GCAATCAAGG ATATGAGCTA AGCAGTGACA GGCTCAACTG TGAAGACATT GATGAATGCA
961GAACCTCAAG CTACCTGTGT CAATATCAAT GTGTCAATGA ACCTGGGAAA TTCTCATGTA
1021TGTGCCCCCA GGGATACCAA GTGGTGAGAA GTAGAACATG TCAAGATATA AATGAGTGTG
1081AGACCACAAA TGAATGCCGG GAGGATGAAA TGTGTTGGAA TTATCATGGC GGCTTCCGTT
1141GTTATCCACG AAATCCTTGT CAAGATCCCT ACATTCTAAC ACCAGAGAAC CGATGTGTTT
1201GCCCAGTCTC AAATGCCATG TGCCGAGAAC TGCCCCAGTC AATAGTCTAC AAATACATGA
1261GCATCCGATC TGATAGGTCT GTGCCATCAG ACATCTTCCA GATACAGGCC ACAACTATTT
1321ATGCCAACAC CATCAATACT TTTCGGATTA AATCTGGAAA TGAAAATGGA GAGTTCTACC
1381TACGACAAAC AAGTCCTGTA AGTGCAATGC TTGTGCTCGT GAAGTCATTA TCAGGACCAA
1441GAGAACATAT CGTGGACCTG GAGATGCTGA CAGTCAGCAG TATAGGGACC TTCCGCACAA
1501GCTCTGTGTT AAGATTGACA ATAATAGTGG GGCCATTTTC ATTTTACCCA ACTTTCTTGT
1561ACAAAGTtgg cattataaga aagcattgct tatcaatttg ttgcaacgaa c

Download FASTA (ORF) (Full)

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