Construct: ORF ccsbBroadEn_00548
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF008479.1_s300c1, BRDN0000389175
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- FDPS (2224)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 2224 | FDPS | farnesyl diphosphate synthase | NM_001135821.2 | 100% | 100% | |
| 2 | human | 2224 | FDPS | farnesyl diphosphate synthase | NM_002004.4 | 100% | 100% | |
| 3 | human | 2224 | FDPS | farnesyl diphosphate synthase | XM_024454066.1 | 92.2% | 92.2% | 922_1026del |
| 4 | human | 2224 | FDPS | farnesyl diphosphate synthase | XM_024454070.1 | 92.2% | 92.2% | 922_1026del |
| 5 | human | 2224 | FDPS | farnesyl diphosphate synthase | NM_001135822.2 | 84.2% | 84.2% | 0_1ins198 |
| 6 | human | 2224 | FDPS | farnesyl diphosphate synthase | NM_001242824.2 | 84.2% | 84.2% | 0_1ins198 |
| 7 | human | 2224 | FDPS | farnesyl diphosphate synthase | XM_005244962.1 | 84.2% | 84.2% | 0_1ins198 |
| 8 | human | 2224 | FDPS | farnesyl diphosphate synthase | XM_005244963.1 | 84.2% | 84.2% | 0_1ins198 |
| 9 | human | 2224 | FDPS | farnesyl diphosphate synthase | XM_024454071.1 | 77.7% | 77.7% | 0_1ins198;724_828del |
| 10 | human | 2224 | FDPS | farnesyl diphosphate synthase | XM_024454072.1 | 77.7% | 77.7% | 0_1ins198;724_828del |
| 11 | human | 2224 | FDPS | farnesyl diphosphate synthase | XM_024454073.1 | 77.7% | 77.7% | 0_1ins198;724_828del |
| 12 | human | 2224 | FDPS | farnesyl diphosphate synthase | XM_024454074.1 | 77.7% | 77.7% | 0_1ins198;724_828del |
| 13 | human | 2224 | FDPS | farnesyl diphosphate synthase | NM_001242825.1 | 59.1% | 59.1% | 0_1ins513 |
| 14 | human | 2224 | FDPS | farnesyl diphosphate synthase | XM_024454076.1 | 54.6% | 54.6% | 0_1ins513;409_513del |
| 15 | human | 619190 | FDPSP2 | farnesyl diphosphate syntha... | NR_003262.1 | 22.1% | (many diffs) | |
| 16 | mouse | 110196 | Fdps | farnesyl diphosphate synthe... | NM_001253751.1 | 85.5% | 83.5% | (many diffs) |
| 17 | mouse | 110196 | Fdps | farnesyl diphosphate synthe... | NM_134469.4 | 71.8% | 71.1% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 1323
- ORF length:
- 1257
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGCC CCTGTCCCGC TGGTTGAGAT CTGTGGGGGT CTTCCTGCTG CCAGCCCCCT 121 ACTGGGCACC CCGGGAGAGG TGGCTGGGTT CCCTACGGCG GCCCTCCCTG GTGCACGGGT 181 ACCCAGTCCT GGCCTGGCAC AGTGCCCGCT GCTGGTGCCA AGCGTGGACA GAGGAACCTC 241 GAGCCCTTTG CTCCTCCCTC AGAATGAACG GAGACCAGAA TTCAGATGTT TATGCCCAAG 301 AAAAGCAGGA TTTCGTTCAG CACTTCTCCC AGATCGTTAG GGTGCTGACT GAGGATGAGA 361 TGGGGCACCC AGAGATAGGA GATGCTATTG CCCGGCTCAA GGAGGTCCTG GAGTACAATG 421 CCATTGGAGG CAAGTATAAC CGGGGTTTGA CGGTGGTAGT AGCATTCCGG GAGCTGGTGG 481 AGCCAAGGAA ACAGGATGCT GATAGTCTCC AGCGGGCCTG GACTGTGGGC TGGTGTGTGG 541 AACTGCTGCA AGCTTTCTTC CTGGTGGCAG ATGACATCAT GGATTCATCC CTTACCCGCC 601 GGGGACAGAT CTGCTGGTAT CAGAAGCCGG GCGTGGGTTT GGATGCCATC AATGATGCTA 661 ACCTCCTGGA AGCATGTATC TACCGCCTGC TGAAGCTCTA TTGCCGGGAG CAGCCCTATT 721 ACCTGAACCT GATCGAGCTC TTCCTGCAGA GTTCCTATCA GACTGAGATT GGGCAGACCC 781 TGGACCTCCT CACAGCCCCC CAGGGCAATG TGGATCTTGT CAGATTCACT GAAAAGAGGT 841 ACAAATCTAT TGTCAAGTAC AAGACAGCTT TCTACTCCTT CTACCTTCCT ATAGCTGCAG 901 CCATGTACAT GGCAGGAATT GATGGCGAGA AGGAGCACGC CAATGCCAAG AAGATCCTGC 961 TGGAGATGGG GGAGTTCTTT CAGATTCAGG ATGATTACCT TGACCTCTTT GGGGACCCCA 1021 GTGTGACCGG CAAAATTGGC ACTGACATCC AGGACAACAA ATGCAGCTGG CTGGTGGTTC 1081 AGTGTCTGCA ACGGGCCACT CCAGAACAGT ACCAGATCCT GAAGGAAAAT TACGGGCAGA 1141 AGGAGGCTGA GAAAGTGGCC CGGGTGAAGG CGCTATATGA GGAGCTGGAT CTGCCAGCAG 1201 TGTTCTTGCA ATATGAGGAA GACAGTTACA GCCACATTAT GGCTCTCATT GAACAGTACG 1261 CAGCACCCCT GCCCCCAGCC GTCTTTCTGG GGCTTGCGCG CAAAATCTAC AAGCGGAGAA 1321 AGTGCCCAAC TTTCTTGTAC AAAGTtggca ttataagaaa gcattgctta tcaatttgtt 1381 gcaacgaac