Construct: ORF ccsbBroadEn_00593

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF004326.1_s300c1, BRDN0000394734
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
NR5A2 (2494)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 2494 NR5A2 nuclear receptor subfamily ... NM_003822.5 100% 100%
2 human 2494 NR5A2 nuclear receptor subfamily ... XM_011509380.1 95% 94% (many diffs)
3 human 2494 NR5A2 nuclear receptor subfamily ... XM_011509381.3 95% 94% (many diffs)
4 human 2494 NR5A2 nuclear receptor subfamily ... XM_011509384.2 95% 94% (many diffs)
5 human 2494 NR5A2 nuclear receptor subfamily ... XM_017000904.1 95% 94% (many diffs)
6 human 2494 NR5A2 nuclear receptor subfamily ... NM_001276464.1 94.7% 94.7% 0_1ins78
7 human 2494 NR5A2 nuclear receptor subfamily ... XM_005245062.3 94.7% 94.7% 0_1ins78
8 human 2494 NR5A2 nuclear receptor subfamily ... XM_011509382.1 94.7% 94.7% 0_1ins78
9 human 2494 NR5A2 nuclear receptor subfamily ... NM_205860.3 91.4% 91.4% 64_201del
10 mouse 26424 Nr5a2 nuclear receptor subfamily ... NM_001159769.2 82.7% 85.6% (many diffs)
11 mouse 26424 Nr5a2 nuclear receptor subfamily ... XM_006529622.4 82.7% 85.6% (many diffs)
12 mouse 26424 Nr5a2 nuclear receptor subfamily ... XM_006529621.3 78.8% 82.4% (many diffs)
13 mouse 26424 Nr5a2 nuclear receptor subfamily ... NM_030676.3 75.9% 79.3% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
1554
ORF length:
1485
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG
61TTGGCACCAT GTCTTCTAAT TCAGATACTG GGGATTTACA AGAGTCTTTA AAGCACGGAC
121TTACACCTAT TGTGTCTCAA TTTAAAATGG TGAATTACTC CTATGATGAA GATCTGGAAG
181AGCTTTGTCC CGTGTGTGGA GATAAAGTGT CTGGGTACCA TTATGGGCTC CTCACCTGTG
241AAAGCTGCAA GGGATTTTTT AAGCGAACAG TCCAAAATAA TAAAAGGTAC ACATGTATAG
301AAAACCAGAA CTGCCAAATT GACAAAACAC AGAGAAAGCG TTGTCCTTAC TGTCGTTTTC
361AAAAATGTCT AAGTGTTGGA ATGAAGCTAG AAGCTGTAAG GGCCGACCGA ATGCGTGGAG
421GAAGGAATAA GTTTGGGCCA ATGTACAAGA GAGACAGGGC CCTGAAGCAA CAGAAAAAAG
481CCCTCATCCG AGCCAATGGA CTTAAGCTAG AAGCCATGTC TCAGGTGATC CAAGCTATGC
541CCTCTGACCT GACCATTTCC TCTGCAATTC AAAACATCCA CTCTGCCTCC AAAGGCCTAC
601CTCTGAACCA TGCTGCCTTG CCTCCTACAG ACTATGACAG AAGTCCCTTT GTAACATCCC
661CCATTAGCAT GACAATGCCC CCTCACGGCA GCCTGCAAGG TTACCAAACA TATGGCCACT
721TTCCTAGCCG GGCCATCAAG TCTGAGTACC CAGACCCCTA TACCAGCTCA CCCGAGTCCA
781TAATGGGCTA TTCATATATG GATAGTTACC AGACGAGCTC TCCAGCAAGC ATCCCACATC
841TGATACTGGA ACTTTTGAAG TGTGAGCCAG ATGAGCCTCA AGTCCAGGCT AAAATCATGG
901CCTATTTGCA GCAAGAGCAG GCTAACCGAA GCAAGCACGA AAAGCTGAGC ACCTTTGGGC
961TTATGTGCAA AATGGCAGAT CAAACTCTCT TCTCCATTGT CGAGTGGGCC AGGAGTAGTA
1021TCTTCTTCAG AGAACTTAAG GTTGATGACC AAATGAAGCT GCTTCAGAAC TGCTGGAGTG
1081AGCTCTTAAT CCTCGACCAC ATTTACCGAC AAGTGGTACA TGGAAAGGAA GGATCCATCT
1141TCCTGGTTAC TGGGCAACAA GTGGACTATT CCATAATAGC ATCACAAGCC GGAGCCACCC
1201TCAACAACCT CATGAGTCAT GCACAGGAGT TAGTGGCAAA ACTTCGTTCT CTCCAGTTTG
1261ATCAACGAGA GTTCGTATGT CTGAAATTCT TGGTGCTCTT TAGTTTAGAT GTCAAAAACC
1321TTGAAAACTT CCAGCTGGTA GAAGGTGTCC AGGAACAAGT CAATGCCGCC CTGCTGGACT
1381ACACAATGTG TAACTACCCG CAGCAGACAG AGAAATTTGG ACAGCTACTT CTTCGACTAC
1441CCGAAATCCG GGCCATCAGT ATGCAGGCTG AAGAATACCT CTACTACAAG CACCTGAACG
1501GGGATGTGCC CTATAATAAC CTTCTCATTG AAATGTTGCA TGCCAAAAGA GCATTGCCAA
1561CTTTCTTGTA CAAAGTtggc attataagaa agcattgctt atcaatttgt tgcaacgaac

Download FASTA (ORF) (Full)