Construct: ORF ccsbBroadEn_00613

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF012376.1_s300c1, BRDN0000394398
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
GALNT3 (2591)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 2591 GALNT3 polypeptide N-acetylgalacto... NM_004482.4 100% 100%
2 human 2591 GALNT3 polypeptide N-acetylgalacto... XM_005246449.1 100% 100%
3 human 2591 GALNT3 polypeptide N-acetylgalacto... XM_011510929.1 100% 100%
4 human 2591 GALNT3 polypeptide N-acetylgalacto... XM_017003770.1 100% 100%
5 human 2591 GALNT3 polypeptide N-acetylgalacto... XR_002959253.1 71.1% 1_341del;1532_1533ins65;1935_1936ins240
6 mouse 14425 Galnt3 UDP-N-acetyl-alpha-D-galact... NM_015736.2 87% 91.9% (many diffs)
7 mouse 14425 Galnt3 UDP-N-acetyl-alpha-D-galact... XR_374409.3 46% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
1968
ORF length:
1899
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG
61TTGGCACCAT GGCTCACCTA AAGCGACTAG TAAAATTACA CATTAAAAGA CATTACCATA
121AAAAGTTCTG GAAGCTTGGT GCAGTAATTT TTTTCTTTAT AATAGTTTTG GTTTTAATGC
181AAAGAGAAGT AAGTGTTCAA TATTCCAAAG AGGAATCAAG GATGGAAAGG AACATGAAAA
241ACAAAAACAA GATGTTGGAT TTAATGCTAG AAGCTGTAAA CAATATTAAG GATGCCATGC
301CAAAAATGCA AATAGGAGCA CCTGTCAGGC AAAACATTGA TGCTGGTGAG AGACCTTGTT
361TGCAAGGATA TTATACAGCA GCAGAATTGA AGCCTGTCCT TGACCGTCCA CCTCAGGATT
421CAAATGCACC TGGTGCTTCT GGTAAAGCAT TCAAGACAAC CAATTTAAGT GTTGAAGAGC
481AAAAGGAAAA GGAACGTGGG GAAGCTAAAC ACTGCTTTAA TGCTTTCGCA AGTGACAGGA
541TTTCTTTGCA CCGAGATCTT GGACCAGACA CTCGACCTCC TGAATGTATT GAACAAAAAT
601TTAAGCGCTG CCCTCCCCTG CCCACCACCA GTGTCATAAT AGTTTTTCAT AATGAAGCGT
661GGTCCACGTT GCTTAGAACT GTCCACAGTG TGCTCTATTC TTCACCTGCA ATACTGCTGA
721AGGAAATCAT TTTGGTGGAT GATGCTAGTG TAGATGAGTA CTTACATGAT AAACTAGATG
781AATATGTAAA ACAATTTTCT ATAGTAAAAA TAGTCAGACA AAGAGAAAGA AAAGGTCTGA
841TCACTGCTCG GTTGCTAGGA GCAACAGTCG CAACAGCTGA AACGCTCACA TTTTTAGATG
901CTCACTGTGA GTGTTTCTAT GGTTGGCTAG AACCTCTGTT GGCCAGAATA GCTGAGAACT
961ACACGGCTGT CGTAAGTCCA GATATTGCAT CCATAGATCT GAACACGTTT GAATTCAACA
1021AACCTTCTCC TTATGGAAGT AACCATAACC GTGGAAATTT TGACTGGAGT CTTTCATTTG
1081GCTGGGAGTC GCTTCCTGAT CATGAGAAGC AAAGAAGGAA AGATGAAACC TACCCAATTA
1141AAACACCCAC TTTTGCAGGA GGACTTTTTT CCATATCAAA AGAATATTTT GAGTATATTG
1201GAAGCTATGA TGAAGAAATG GAAATCTGGG GAGGTGAAAA TATAGAAATG TCTTTCAGAG
1261TATGGCAATG TGGTGGGCAG TTGGAGATTA TGCCTTGCTC TGTTGTTGGA CATGTTTTTC
1321GCAGCAAAAG CCCTCATAGC TTTCCAAAAG GCACTCAGGT GATTGCTAGA AACCAAGTTC
1381GCCTTGCAGA AGTCTGGATG GATGAATACA AGGAAATATT TTATAGGAGA AATACAGATG
1441CAGCAAAAAT TGTTAAACAA AAAGCATTTG GTGATCTTTC AAAAAGATTT GAAATAAAAC
1501ACCGCCTTCA GTGTAAAAAT TTTACATGGT ATCTGAACAA CATTTATCCA GAGGTGTATG
1561TGCCAGACCT TAATCCTGTT ATATCTGGAT ACATTAAAAG CGTTGGTCAG CCTCTATGTC
1621TGGATGTTGG AGAAAACAAT CAAGGAGGCA AACCATTAAT TATGTATACA TGTCATGGAC
1681TTGGGGGAAA CCAGTACTTT GAATACTCTG CTCAACATGA AATTCGGCAC AACATCCAGA
1741AGGAATTATG TCTTCATGCT GCTCAAGGTC TCGTTCAGCT GAAGGCATGT ACCTACAAAG
1801GTCACAAGAC AGTTGTCACT GGAGAGCAGA TATGGGAGAT CCAGAAGGAT CAACTTCTAT
1861ACAATCCATT CTTAAAAATG TGCCTTTCAG CAAATGGAGA GCATCCAAGT TTAGTGTCAT
1921GCAACCCATC AGATCCACTC CAAAAATGGA TACTTAGCCA AAATGATTTG CCAACTTTCT
1981TGTACAAAGT tggcattata agaaagcatt gcttatcaat ttgttgcaac gaac

Download FASTA (ORF) (Full)

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