Construct: ORF ccsbBroadEn_00661
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF000657.1_s300c1, BRDN0000391804
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- GNGT2 (2793)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 2793 | GNGT2 | G protein subunit gamma tra... | NM_001198754.2 | 100% | 100% | |
| 2 | human | 2793 | GNGT2 | G protein subunit gamma tra... | NM_001198755.1 | 100% | 100% | |
| 3 | human | 2793 | GNGT2 | G protein subunit gamma tra... | NM_001198756.1 | 100% | 100% | |
| 4 | human | 2793 | GNGT2 | G protein subunit gamma tra... | NM_031498.2 | 100% | 100% | |
| 5 | mouse | 14710 | Gngt2 | guanine nucleotide binding ... | NM_001038664.2 | 85% | 82.6% | (many diffs) |
| 6 | mouse | 14710 | Gngt2 | guanine nucleotide binding ... | NM_001284393.1 | 85% | 82.6% | (many diffs) |
| 7 | mouse | 14710 | Gngt2 | guanine nucleotide binding ... | NM_001284397.1 | 85% | 82.6% | (many diffs) |
| 8 | mouse | 14710 | Gngt2 | guanine nucleotide binding ... | NM_023121.2 | 85% | 82.6% | (many diffs) |
| 9 | mouse | 14710 | Gngt2 | guanine nucleotide binding ... | XM_006532231.3 | 85% | 82.6% | (many diffs) |
| 10 | mouse | 14710 | Gngt2 | guanine nucleotide binding ... | XM_011248737.1 | 85% | 82.6% | (many diffs) |
| 11 | mouse | 14710 | Gngt2 | guanine nucleotide binding ... | XM_017314274.1 | 85% | 82.6% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 273
- ORF length:
- 207
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGGC CCAGGATCTC AGCGAGAAGG ACCTGTTGAA GATGGAGGTG GAGCAGCTGA 121 AGAAAGAAGT GAAAAACACA AGAATTCCGA TTTCCAAAGC GGGAAAGGAA ATCAAGGAGT 181 ACGTGGAGGC CCAAGCAGGA AACGATCCTT TTCTCAAAGG CATCCCTGAG GACAAGAATC 241 CCTTCAAGGA GAAAGGTGGC TGTCTGATAA GCTGCCCAAC TTTCTTGTAC AAAGTtggca 301 ttataagaaa gcattgctta tcaatttgtt gcaacgaac