Construct: ORF ccsbBroadEn_00685
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF001392.1_s300c1, BRDN0000387333
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- Early stop codon detected
Originally Annotated References:
- Gene:
- GPX1 (2876)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 2876 | GPX1 | glutathione peroxidase 1 | NM_000581.4 | 100% | 100% | |
| 2 | human | 2876 | GPX1 | glutathione peroxidase 1 | NM_001329503.2 | 78.1% | 100% | 251_269del;510_511ins118 |
| 3 | human | 2876 | GPX1 | glutathione peroxidase 1 | NM_001329455.1 | 77.3% | 24.8% | 112_113ins138 |
| 4 | human | 2876 | GPX1 | glutathione peroxidase 1 | NM_001329502.2 | 48% | 100% | (many diffs) |
| 5 | human | 2876 | GPX1 | glutathione peroxidase 1 | NM_201397.3 | 47.1% | 100% | (many diffs) |
| 6 | mouse | 14775 | Gpx1 | glutathione peroxidase 1 | NM_008160.6 | 82.7% | 85.4% | (many diffs) |
| 7 | mouse | 14775 | Gpx1 | glutathione peroxidase 1 | NM_001329527.1 | 82.3% | 85.4% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 210
- ORF length:
- 144
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGTG TGCTGCTCGG CTAGCGGCGG CGGCGGCGGC GGCCCAGTCG GTGTATGCCT 121 TCTCGGCGCG CCCGCTGGCC GGCGGGGAGC CTGTGAGCCT GGGCTCCCTG CGGGGCAAGG 181 TACTACTTAT CGAGAATGTG GCGTCCCTCT GAGGCACCAC GGTCCGGGAC TACACCCAGA 241 TGAACGAGCT GCAGCGGCGC CTCGGACCCC GGGGCCTGGT GGTGCTCGGC TTCCCGTGCA 301 ACCAGTTTGG GCATCAGGAG AACGCCAAGA ACGAAGAGAT TCTGAATTCC CTCAAGTACG 361 TCCGGCCTGG TGGTGGGTTC GAGCCCAACT TCATGCTCTT CGAGAAGTGC GAGGTGAACG 421 GTGCGGGGGC GCACCCTCTC TTCGCCTTCC TGCGGGAGGC CCTGCCAGCT CCCAGCGACG 481 ACGCCACCGC GCTTATGACC GACCCCAAGC TCATCACCTG GTCTCCGGTG TGTCGCAACG 541 ATGTTGCCTG GAACTTTGAG AAGTTCCTGG TGGGCCCTGA CGGTGTGCCC CTACGCAGGT 601 ACAGCCGCCG CTTCCAGACC ATTGACATCG AGCCTGACAT CGAAGCCCTG CTGTCTCAAG 661 GGCCCAGCTG TGCCTACCCA ACTTTCTTGT ACAAAGTtgg cattataaga aagcattgct 721 tatcaatttg ttgcaacgaa c