Construct: ORF ccsbBroadEn_00776

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF004828.1_s300c1, BRDN0000385679
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
HOXB6 (3216)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 3216 HOXB6 homeobox B6 NM_001369397.2 100% 100%
2 human 3216 HOXB6 homeobox B6 NM_018952.5 100% 100%
3 human 3216 HOXB6 homeobox B6 XM_011524727.3 77.7% 77.7% 1_192del
4 mouse 15414 Hoxb6 homeobox B6 NM_008269.1 91.2% 97.7% (many diffs)
5 mouse 15414 Hoxb6 homeobox B6 XM_006532292.3 66.1% 70.8% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
738
ORF length:
672
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGAG TTCCTATTTC GTGAACTCCA CCTTCCCCGT CACTCTGGCC AGCGGGCAGG
121AGTCCTTCCT GGGCCAGCTA CCGCTCTATT CGTCGGGCTA TGCGGACCCG CTGAGACATT
181ACCCCGCGCC CTACGGGCCA GGGCCGGGCC AGGACAAGGG CTTTGCCACT TCCTCCTATT
241ACCCGCCGGC GGGCGGTGGC TACGGCCGAG CGGCGCCCTG CGACTACGGG CCGGCGCCGG
301CCTTCTACCG CGAGAAAGAG TCGGCCTGCG CACTCTCCGG CGCCGACGAG CAGCCCCCGT
361TCCACCCCGA GCCGCGGAAG TCGGACTGCG CGCAGGACAA GAGCGTGTTC GGCGAGACAG
421AAGAGCAGAA GTGCTCCACT CCGGTCTACC CGTGGATGCA GCGGATGAAT TCGTGCAACA
481GTTCCTCCTT TGGGCCCAGC GGCCGGCGAG GCCGCCAGAC ATACACACGT TACCAGACGC
541TGGAGCTGGA GAAGGAGTTT CACTACAATC GCTACCTGAC GCGGCGGCGG CGCATCGAGA
601TCGCGCACGC CCTGTGCCTG ACGGAGAGGC AGATCAAGAT ATGGTTCCAG AACCGACGCA
661TGAAGTGGAA AAAGGAGAGC AAACTGCTCA GCGCGTCTCA GCTCAGTGCC GAGGAGGAGG
721AAGAAAAACA GGCCGAGTGC CCAACTTTCT TGTACAAAGT tggcattata agaaagcatt
781gcttatcaat ttgttgcaac gaac

Download FASTA (ORF) (Full)