Transcript: Human NM_018952.5

Homo sapiens homeobox B6 (HOXB6), transcript variant 1, mRNA.

Source:
NCBI, updated 2019-09-27
Taxon:
Homo sapiens (human)
Gene:
HOXB6 (3216)
Length:
1676
CDS:
340..1014

Additional Resources:

NCBI RefSeq record:
NM_018952.5
NBCI Gene record:
HOXB6 (3216)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NM_018952.5, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000234942 AGCGGACTCACTTGATGTTTC pLKO_005 1293 3UTR 100% 10.800 15.120 N HOXB6 n/a
2 TRCN0000321405 GCACGGTTCAATGGTAGATTC pLKO_005 1374 3UTR 100% 10.800 8.640 N Hoxb6 n/a
3 TRCN0000234940 CGTGCAACAGTTCCTCCTTTG pLKO_005 746 CDS 100% 6.000 4.800 N HOXB6 n/a
4 TRCN0000234938 TGCGGACCCGCTGAGACATTA pLKO_005 435 CDS 100% 4.400 3.520 N HOXB6 n/a
5 TRCN0000234941 CGGAGAGGCAGATCAAGATAT pLKO_005 896 CDS 100% 13.200 9.240 N HOXB6 n/a
6 TRCN0000234939 TTTGCCACTTCCTCCTATTAC pLKO_005 496 CDS 100% 13.200 9.240 N HOXB6 n/a
7 TRCN0000015869 GCTTTGCCACTTCCTCCTATT pLKO.1 494 CDS 100% 10.800 7.560 N HOXB6 n/a
8 TRCN0000015868 GCACATACTACCTAGAAGTAA pLKO.1 1480 3UTR 100% 5.625 3.938 N HOXB6 n/a
9 TRCN0000015870 CCGCCAGACATACACACGTTA pLKO.1 786 CDS 100% 4.950 3.465 N HOXB6 n/a
10 TRCN0000015871 CCGCTCTATTCGTCGGGCTAT pLKO.1 415 CDS 100% 1.350 0.945 N HOXB6 n/a
11 TRCN0000015872 CCGGCCTTCTACCGCGAGAAA pLKO.1 571 CDS 100% 0.000 0.000 N HOXB6 n/a
12 TRCN0000096062 GAGAAGGAGTTTCACTACAAT pLKO.1 823 CDS 100% 5.625 2.813 Y Hoxb4 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_018952.5, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_00776 pDONR223 100% 100% 100% None n/a
2 ccsbBroad304_00776 pLX_304 0% 100% 100% V5 n/a
3 TRCN0000473651 AGCCCAGTGTGTCACCACACTTCC pLX_317 55.2% 100% 100% V5 n/a
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