Construct: ORF ccsbBroadEn_00844
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF005752.1_s300c1, BRDN0000394147
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- IL1R1 (3554)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 3554 | IL1R1 | interleukin 1 receptor type 1 | NM_000877.4 | 100% | 100% | |
| 2 | human | 3554 | IL1R1 | interleukin 1 receptor type 1 | NM_001320978.2 | 100% | 100% | |
| 3 | human | 3554 | IL1R1 | interleukin 1 receptor type 1 | NM_001320980.2 | 100% | 100% | |
| 4 | human | 3554 | IL1R1 | interleukin 1 receptor type 1 | NM_001320981.2 | 100% | 100% | |
| 5 | human | 3554 | IL1R1 | interleukin 1 receptor type 1 | NM_001320982.2 | 100% | 100% | |
| 6 | human | 3554 | IL1R1 | interleukin 1 receptor type 1 | XM_005263930.4 | 100% | 100% | |
| 7 | human | 3554 | IL1R1 | interleukin 1 receptor type 1 | XM_005263934.4 | 100% | 100% | |
| 8 | human | 3554 | IL1R1 | interleukin 1 receptor type 1 | XM_011511115.2 | 100% | 100% | |
| 9 | human | 3554 | IL1R1 | interleukin 1 receptor type 1 | XM_011511116.1 | 100% | 100% | |
| 10 | human | 3554 | IL1R1 | interleukin 1 receptor type 1 | XM_011511117.1 | 100% | 100% | |
| 11 | human | 3554 | IL1R1 | interleukin 1 receptor type 1 | XM_011511118.2 | 100% | 100% | |
| 12 | human | 3554 | IL1R1 | interleukin 1 receptor type 1 | XM_017003989.1 | 100% | 100% | |
| 13 | human | 3554 | IL1R1 | interleukin 1 receptor type 1 | NM_001288706.2 | 94.5% | 94.5% | 1131_1132ins93 |
| 14 | human | 3554 | IL1R1 | interleukin 1 receptor type 1 | NM_001320983.1 | 74.6% | 74.6% | 0_1ins432 |
| 15 | human | 3554 | IL1R1 | interleukin 1 receptor type 1 | NM_001320984.1 | 67.8% | 67.8% | 0_1ins549 |
| 16 | human | 3554 | IL1R1 | interleukin 1 receptor type 1 | NM_001320985.1 | 58.6% | 58.6% | 0_1ins705 |
| 17 | human | 3554 | IL1R1 | interleukin 1 receptor type 1 | NM_001320986.2 | 28.9% | 28.6% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 1773
- ORF length:
- 1707
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGAA AGTGTTACTC AGACTTATTT GTTTCATAGC TCTACTGATT TCTTCTCTGG 121 AGGCTGATAA ATGCAAGGAA CGTGAAGAAA AAATAATTTT AGTGTCATCT GCAAATGAAA 181 TTGATGTTCG TCCCTGTCCT CTTAACCCAA ATGAACACAA AGGCACTATA ACTTGGTATA 241 AAGATGACAG CAAGACACCT GTATCTACAG AACAAGCCTC CAGGATTCAT CAACACAAAG 301 AGAAACTTTG GTTTGTTCCT GCTAAGGTGG AGGATTCAGG ACATTACTAT TGCGTGGTAA 361 GAAATTCATC TTACTGCCTC AGAATTAAAA TAAGTGCAAA ATTTGTGGAG AATGAGCCTA 421 ACTTATGTTA TAATGCACAA GCCATATTTA AGCAGAAACT ACCCGTTGCA GGAGACGGAG 481 GACTTGTGTG CCCTTATATG GAGTTTTTTA AAAATGAAAA TAATGAGTTA CCTAAATTAC 541 AGTGGTATAA GGATTGCAAA CCTCTACTTC TTGACAATAT ACACTTTAGT GGAGTCAAAG 601 ATAGGCTCAT CGTGATGAAT GTGGCTGAAA AGCATAGAGG GAACTATACT TGTCATGCAT 661 CCTACACATA CTTGGGCAAG CAATATCCTA TTACCCGGGT AATAGAATTT ATTACTCTAG 721 AGGAAAACAA ACCCACAAGG CCTGTGATTG TGAGCCCAGC TAATGAGACA ATGGAAGTAG 781 ACTTGGGATC CCAGATACAA TTGATCTGTA ATGTCACCGG CCAGTTGAGT GACATTGCTT 841 ACTGGAAGTG GAATGGGTCA GTAATTGATG AAGATGACCC AGTGCTAGGG GAAGACTATT 901 ACAGTGTGGA AAATCCTGCA AACAAAAGAA GGAGTACCCT CATCACAGTG CTTAATATAT 961 CGGAAATTGA AAGTAGATTT TATAAACATC CATTTACCTG TTTTGCCAAG AATACACATG 1021 GTATAGATGC AGCATATATC CAGTTAATAT ATCCAGTCAC TAATTTCCAG AAGCACATGA 1081 TTGGTATATG TGTCACGTTG ACAGTCATAA TTGTGTGTTC TGTTTTCATC TATAAAATCT 1141 TCAAGATTGA CATTGTGCTT TGGTACAGGG ATTCCTGCTA TGATTTTCTC CCAATAAAAG 1201 CTTCAGATGG AAAGACCTAT GACGCATATA TACTGTATCC AAAGACTGTT GGGGAAGGGT 1261 CTACCTCTGA CTGTGATATT TTTGTGTTTA AAGTCTTGCC TGAGGTCTTG GAAAAACAGT 1321 GTGGATATAA GCTGTTCATT TATGGAAGGG ATGACTACGT TGGGGAAGAC ATTGTTGAGG 1381 TCATTAATGA AAACGTAAAG AAAAGCAGAA GACTGATTAT CATTTTAGTC AGAGAAACAT 1441 CAGGCTTCAG CTGGCTGGGT GGTTCATCTG AAGAGCAAAT AGCCATGTAT AATGCTCTTG 1501 TTCAGGATGG AATTAAAGTT GTCCTGCTTG AGCTGGAGAA AATCCAAGAC TATGAGAAAA 1561 TGCCAGAATC GATTAAATTC ATTAAGCAGA AACATGGGGC TATCCGCTGG TCAGGGGACT 1621 TTACACAGGG ACCACAGTCT GCAAAGACAA GGTTCTGGAA GAATGTCAGG TACCACATGC 1681 CAGTCCAGCG ACGGTCACCT TCATCTAAAC ACCAGTTACT GTCACCAGCC ACTAAGGAGA 1741 AACTGCAAAG AGAGGCTCAC GTGCCTCTCG GGTACCCAAC TTTCTTGTAC AAAGTtggca 1801 ttataagaaa gcattgctta tcaatttgtt gcaacgaac