Construct: ORF ccsbBroadEn_00845

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF013123.1_s300c1, BRDN0000387216
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
IL1RAP (3556)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 3556 IL1RAP interleukin 1 receptor acce... NM_001167930.2 100% 100%
2 human 3556 IL1RAP interleukin 1 receptor acce... NM_134470.4 100% 100%
3 human 3556 IL1RAP interleukin 1 receptor acce... NM_001364880.2 92.2% 91.1% (many diffs)
4 human 3556 IL1RAP interleukin 1 receptor acce... NM_001167928.2 61.4% 61.7% 1051_1052insGTAATAGA;1054_1055insGGT;1058_1710del
5 human 3556 IL1RAP interleukin 1 receptor acce... NM_001167929.2 61.4% 61.7% 1051_1052insGTAATAGA;1054_1055insGGT;1058_1710del
6 human 3556 IL1RAP interleukin 1 receptor acce... NM_001364881.2 61.4% 61.7% 1051_1052insGTAATAGA;1054_1055insGGT;1058_1710del
7 human 3556 IL1RAP interleukin 1 receptor acce... NM_002182.4 61.4% 61.7% 1051_1052insGTAATAGA;1054_1055insGGT;1058_1710del
8 human 3556 IL1RAP interleukin 1 receptor acce... NM_001167931.2 51% 51.2% 1051_1052insGTAATAGA;1054_1055insGGT;1058_2061del
9 human 3556 IL1RAP interleukin 1 receptor acce... NM_001364879.1 51% 51.2% 1051_1052insGTAATAGA;1054_1055insGGT;1058_2061del
10 human 3556 IL1RAP interleukin 1 receptor acce... XM_017006348.2 27.6% 27.7% (many diffs)
11 human 3556 IL1RAP interleukin 1 receptor acce... NR_157353.2 22.9% (many diffs)
12 human 3556 IL1RAP interleukin 1 receptor acce... NR_157352.2 22.4% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1134
ORF length:
1068
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGAC ACTTCTGTGG TGTGTAGTGA GTCTCTACTT TTATGGAATC CTGCAAAGTG
121ATGCCTCAGA ACGCTGCGAT GACTGGGGAC TAGACACCAT GAGGCAAATC CAAGTGTTTG
181AAGATGAGCC AGCTCGCATC AAGTGCCCAC TCTTTGAACA CTTCTTGAAA TTCAACTACA
241GCACAGCCCA TTCAGCTGGC CTTACTCTGA TCTGGTATTG GACTAGGCAG GACCGGGACC
301TTGAGGAGCC AATTAACTTC CGCCTCCCCG AGAACCGCAT TAGTAAGGAG AAAGATGTGC
361TGTGGTTCCG GCCCACTCTC CTCAATGACA CTGGCAACTA TACCTGCATG TTAAGGAACA
421CTACATATTG CAGCAAAGTT GCATTTCCCT TGGAAGTTGT TCAAAAAGAC AGCTGTTTCA
481ATTCCCCCAT GAAACTCCCA GTGCATAAAC TGTATATAGA ATATGGCATT CAGAGGATCA
541CTTGTCCAAA TGTAGATGGA TATTTTCCTT CCAGTGTCAA ACCGACTATC ACTTGGTATA
601TGGGCTGTTA TAAAATACAG AATTTTAATA ATGTAATACC CGAAGGTATG AACTTGAGTT
661TCCTCATTGC CTTAATTTCA AATAATGGAA ATTACACATG TGTTGTTACA TATCCAGAAA
721ATGGACGTAC GTTTCATCTC ACCAGGACTC TGACTGTAAA GGTAGTAGGC TCTCCAAAAA
781ATGCAGTGCC CCCTGTGATC CATTCACCTA ATGATCATGT GGTCTATGAG AAAGAACCAG
841GAGAGGAGCT ACTCATTCCC TGTACGGTCT ATTTTAGTTT TCTGATGGAT TCTCGCAATG
901AGGTTTGGTG GACCATTGAT GGAAAAAAAC CTGATGACAT CACTATTGAT GTCACCATTA
961ACGAAAGTAT AAGTCATAGT AGAACAGAAG ATGAAACAAG AACTCAGATT TTGAGCATCA
1021AGAAAGTTAC CTCTGAGGAT CTCAAGCGCA GCTATGTCTG TCATGCTAGA AGTGCCAAAG
1081GCGAAGTTGC CAAAGCAGCC AAGGTGAAGC AGAAAGGTAA TAGATGCGGT CAGTGCCCAA
1141CTTTCTTGTA CAAAGTtggc attataagaa agcattgctt atcaatttgt tgcaacgaac

Download FASTA (ORF) (Full)