Transcript: Human NM_001167928.2

Homo sapiens interleukin 1 receptor accessory protein (IL1RAP), transcript variant 3, mRNA.

Source:
NCBI, updated 2019-06-26
Taxon:
Homo sapiens (human)
Gene:
IL1RAP (3556)
Length:
4909
CDS:
388..2100

Additional Resources:

NCBI RefSeq record:
NM_001167928.2
NBCI Gene record:
IL1RAP (3556)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NM_001167928.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000058538 CGCATTAGTAAGGAGAAAGAT pLKO.1 658 CDS 100% 5.625 7.875 N IL1RAP n/a
2 TRCN0000372573 TCATTCCCTGTACGGTCTATT pLKO_005 1175 CDS 100% 13.200 10.560 N IL1RAP n/a
3 TRCN0000058540 CCCAGTGCATAAACTGTATAT pLKO.1 819 CDS 100% 13.200 9.240 N IL1RAP n/a
4 TRCN0000372626 GACGGTGCTCACGGTCATTAA pLKO_005 1941 CDS 100% 13.200 9.240 N IL1RAP n/a
5 TRCN0000378802 GGTCATGAGTTTCCGAGTATA pLKO_005 2482 3UTR 100% 13.200 9.240 N IL1RAP n/a
6 TRCN0000058539 CCTCTCGTATTCATCTTTGAA pLKO.1 2070 CDS 100% 5.625 3.938 N IL1RAP n/a
7 TRCN0000058542 CCATGTTTACTGGCTAGAGAT pLKO.1 1521 CDS 100% 4.950 3.465 N IL1RAP n/a
8 TRCN0000058541 CGAAGGTATGAACTTGAGTTT pLKO.1 963 CDS 100% 4.950 3.465 N IL1RAP n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_001167928.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_00845 pDONR223 100% 61.4% 61.7% None 1051_1052insGTAATAGA;1054_1055insGGT;1058_1710del n/a
2 ccsbBroad304_00845 pLX_304 0% 61.4% 61.7% V5 1051_1052insGTAATAGA;1054_1055insGGT;1058_1710del n/a
3 TRCN0000469557 ATTCAATATAGCCGAGTTCTAGTT pLX_317 43.4% 61.4% 61.7% V5 1051_1052insGTAATAGA;1054_1055insGGT;1058_1710del n/a
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