Construct: ORF ccsbBroadEn_00850

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF018020.1_s300c1, BRDN0000387910
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
IL6R (3570)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 3570 IL6R interleukin 6 receptor NM_000565.4 100% 100%
2 human 3570 IL6R interleukin 6 receptor XM_006711298.2 96.6% 96.6% 948_995del
3 human 3570 IL6R interleukin 6 receptor XM_017001200.2 93.4% 93.2% 1067_1165del
4 human 3570 IL6R interleukin 6 receptor XM_017001199.2 90.5% 90.3% 948_995del;1115_1213del
5 human 3570 IL6R interleukin 6 receptor NM_181359.3 77.9% 76.1% 1064_1065ins94;1095_1096ins215
6 human 3570 IL6R interleukin 6 receptor XM_005245139.2 76.9% 59.1% 806_807ins142;922_923ins94;1080_1081ins88
7 human 3570 IL6R interleukin 6 receptor XM_006711299.4 75.4% 73.6% 948_995del;1112_1113ins94;1143_1144ins215
8 human 3570 IL6R interleukin 6 receptor NM_001206866.1 72.6% 69% (many diffs)
9 human 3570 IL6R interleukin 6 receptor XM_005245140.3 72.2% 56.3% 806_807ins142;1014_1015ins248
10 human 3570 IL6R interleukin 6 receptor XM_017001201.2 67.4% 55.4% 806_807ins142;925_1023del;1113_1114ins248
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
1473
ORF length:
1404
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG
61TTGGCACCAT GCTGGCCGTC GGCTGCGCGC TGCTGGCTGC CCTGCTGGCC GCGCCGGGAG
121CGGCGCTGGC CCCAAGGCGC TGCCCTGCGC AGGAGGTGGC GAGAGGCGTG CTGACCAGTC
181TGCCAGGAGA CAGCGTGACT CTGACCTGCC CGGGGGTAGA GCCGGAAGAC AATGCCACTG
241TTCACTGGGT GCTCAGGAAG CCGGCTGCAG GCTCCCACCC CAGCAGATGG GCTGGCATGG
301GAAGGAGGCT GCTGCTGAGG TCGGTGCAGC TCCACGACTC TGGAAACTAT TCATGCTACC
361GGGCCGGCCG CCCAGCTGGG ACTGTGCACT TGCTGGTGGA TGTTCCCCCC GAGGAGCCCC
421AGCTCTCCTG CTTCCGGAAG AGCCCCCTCA GCAATGTTGT TTGTGAGTGG GGTCCTCGGA
481GCACCCCATC CCTGACGACA AAGGCTGTGC TCTTGGTGAG GAAGTTTCAG AACAGTCCGG
541CCGAAGACTT CCAGGAGCCG TGCCAGTATT CCCAGGAGTC CCAGAAGTTC TCCTGCCAGT
601TAGCAGTCCC GGAGGGAGAC AGCTCTTTCT ACATAGTGTC CATGTGCGTC GCCAGTAGTG
661TCGGGAGCAA GTTCAGCAAA ACTCAAACCT TTCAGGGTTG TGGAATCTTG CAGCCTGATC
721CGCCTGCCAA CATCACAGTC ACTGCCGTGG CCAGAAACCC CCGCTGGCTC AGTGTCACCT
781GGCAAGACCC CCACTCCTGG AACTCATCTT TCTACAGACT ACGGTTTGAG CTCAGATATC
841GGGCTGAACG GTCAAAGACA TTCACAACAT GGATGGTCAA GGACCTCCAG CATCACTGTG
901TCATCCACGA CGCCTGGAGC GGCCTGAGGC ACGTGGTGCA GCTTCGTGCC CAGGAGGAGT
961TCGGGCAAGG CGAGTGGAGC GAGTGGAGCC CGGAGGCCAT GGGCACGCCT TGGACAGAAT
1021CCAGGAGTCC TCCAGCTGAG AACGAGGTGT CCACCCCCAT GCAGGCACTT ACTACTAATA
1081AAGACGATGA TAATATTCTC TTCAGAGATT CTGCAAATGC GACAAGCCTC CCAGTGCAAG
1141ATTCTTCTTC AGTACCACTG CCCACATTCC TGGTTGCTGG AGGGAGCCTG GCCTTCGGAA
1201CGCTCCTCTG CATTGCCATT GTTCTGAGGT TCAAGAAGAC GTGGAAGCTG CGGGCTCTGA
1261AGGAAGGCAA GACAAGCATG CATCCGCCGT ACTCTTTGGG GCAGCTGGTC CCGGAGAGGC
1321CTCGACCCAC CCCAGTGCTT GTTCCTCTCA TCTCCCCACC GGTGTCCCCC AGCAGCCTGG
1381GGTCTGACAA TACCTCGAGC CACAACCGAC CAGATGCCAG GGACCCACGG AGCCCTTATG
1441ACATCAGCAA TACAGACTAC TTCTTCCCCA GATTGCCAAC TTTCTTGTAC AAAGTtggca
1501ttataagaaa gcattgctta tcaatttgtt gcaacgaac

Download FASTA (ORF) (Full)

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