Construct: ORF ccsbBroadEn_00871
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF000263.1_s300c1, BRDN0000391702
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- INHBA (3624)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 3624 | INHBA | inhibin subunit beta A | NM_002192.4 | 100% | 100% | |
| 2 | human | 3624 | INHBA | inhibin subunit beta A | XM_017012176.1 | 100% | 100% | |
| 3 | human | 3624 | INHBA | inhibin subunit beta A | XM_017012175.1 | 88.1% | 88.1% | 1_171del |
| 4 | human | 3624 | INHBA | inhibin subunit beta A | XM_017012174.1 | 77.7% | 77.7% | 1_366del |
| 5 | mouse | 16323 | Inhba | inhibin beta-A | NM_008380.2 | 90.6% | 96% | (many diffs) |
| 6 | mouse | 16323 | Inhba | inhibin beta-A | XM_006516558.2 | 90.6% | 96% | (many diffs) |
| 7 | mouse | 16323 | Inhba | inhibin beta-A | XM_006516559.2 | 90.6% | 96% | (many diffs) |
| 8 | mouse | 16323 | Inhba | inhibin beta-A | XM_011244285.2 | 90.6% | 96% | (many diffs) |
| 9 | mouse | 16323 | Inhba | inhibin beta-A | XM_011244286.1 | 90.6% | 96% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 1344
- ORF length:
- 1278
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGCC CTTGCTTTGG CTGAGAGGAT TTCTGTTGGC AAGTTGCTGG ATTATAGTGA 121 GGAGTTCCCC CACCCCAGGA TCCGAGGGGC ACAGCGCGGC CCCCGACTGT CCGTCCTGTG 181 CGCTGGCCGC CCTCCCAAAG GATGTACCCA ACTCTCAGCC AGAGATGGTG GAGGCCGTCA 241 AGAAGCACAT TTTAAACATG CTGCACTTGA AGAAGAGACC CGATGTCACC CAGCCGGTAC 301 CCAAGGCGGC GCTTCTGAAC GCGATCAGAA AGCTTCATGT GGGCAAAGTC GGGGAGAACG 361 GGTATGTGGA GATAGAGGAT GACATTGGAA GGAGGGCAGA AATGAATGAA CTTATGGAGC 421 AGACCTCGGA GATCATCACG TTTGCCGAGT CAGGAACAGC CAGGAAGACG CTGCACTTCG 481 AGATTTCCAA GGAAGGCAGT GACCTGTCAG TGGTGGAGCG TGCAGAAGTC TGGCTCTTCC 541 TAAAAGTCCC CAAGGCCAAC AGGACCAGGA CCAAAGTCAC CATCCGCCTC TTCCAGCAGC 601 AGAAGCACCC GCAGGGCAGC TTGGACACAG GGGAAGAGGC CGAGGAAGTG GGCTTAAAGG 661 GGGAGAGGAG TGAACTGTTG CTCTCTGAAA AAGTAGTAGA CGCTCGGAAG AGCACCTGGC 721 ATGTCTTCCC TGTCTCCAGC AGCATCCAGC GGTTGCTGGA CCAGGGCAAG AGCTCCCTGG 781 ACGTTCGGAT TGCCTGTGAG CAGTGCCAGG AGAGTGGCGC CAGCTTGGTT CTCCTGGGCA 841 AGAAGAAGAA GAAAGAAGAG GAGGGGGAAG GGAAAAAGAA GGGCGGAGGT GAAGGTGGGG 901 CAGGAGCAGA TGAGGAAAAG GAGCAGTCGC ACAGACCTTT CCTCATGCTG CAGGCCCGGC 961 AGTCTGAAGA CCACCCTCAT CGCCGGCGTC GGCGGGGCTT GGAGTGTGAT GGCAAGGTCA 1021 ACATCTGCTG TAAGAAACAG TTCTTTGTCA GTTTCAAGGA CATCGGCTGG AATGACTGGA 1081 TCATTGCTCC CTCTGGCTAT CATGCCAACT ACTGCGAGGG TGAGTGCCCG AGCCATATAG 1141 CAGGCACGTC CGGGTCCTCA CTGTCCTTCC ACTCAACAGT CATCAACCAC TACCGCATGC 1201 GGGGCCATAG CCCCTTTGCC AACCTCAAAT CGTGCTGTGT GCCCACCAAG CTGAGACCCA 1261 TGTCCATGTT GTACTATGAT GATGGTCAAA ACATCATCAA AAAGGACATT CAGAACATGA 1321 TCGTGGAGGA GTGTGGGTGC TCATACCCAA CTTTCTTGTA CAAAGTtggc attataagaa 1381 agcattgctt atcaatttgt tgcaacgaac