Construct: ORF ccsbBroadEn_00875
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF009691.1_s300c1, BRDN0000394726
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- INPP5A (3632)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 3632 | INPP5A | inositol polyphosphate-5-ph... | NM_005539.5 | 100% | 100% | |
| 2 | human | 3632 | INPP5A | inositol polyphosphate-5-ph... | XM_017016204.1 | 82% | 74.5% | (many diffs) |
| 3 | human | 3632 | INPP5A | inositol polyphosphate-5-ph... | NM_001321042.1 | 81.6% | 76.9% | (many diffs) |
| 4 | human | 3632 | INPP5A | inositol polyphosphate-5-ph... | XM_017016205.1 | 73% | 73% | (many diffs) |
| 5 | human | 3632 | INPP5A | inositol polyphosphate-5-ph... | XR_945735.1 | 20.1% | (many diffs) | |
| 6 | human | 3632 | INPP5A | inositol polyphosphate-5-ph... | XR_001747104.1 | 16.7% | (many diffs) | |
| 7 | mouse | 212111 | Inpp5a | inositol polyphosphate-5-ph... | NM_001127363.1 | 90.2% | 97% | (many diffs) |
| 8 | mouse | 212111 | Inpp5a | inositol polyphosphate-5-ph... | XM_017322096.1 | 86.8% | 90.4% | (many diffs) |
| 9 | mouse | 212111 | Inpp5a | inositol polyphosphate-5-ph... | NM_183144.3 | 86.3% | 90.4% | (many diffs) |
| 10 | mouse | 212111 | Inpp5a | inositol polyphosphate-5-ph... | XM_006536162.1 | 85% | 87.5% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 1305
- ORF length:
- 1236
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG 61 TTGGCACCAT GGCGGGGAAG GCGGCCGCCC CGGGCACCGC GGTGCTGCTG GTCACGGCCA 121 ACGTGGGCTC GCTCTTCGAC GACCCAGAAA ACCTGCAGAA GAACTGGCTT CGGGAATTTT 181 ACCAGGTCGT GCACACACAC AAGCCGCACT TCATGGCCTT GCACTGTCAG GAGTTTGGAG 241 GGAAGAACTA CGAGGCCTCC ATGTCCCACG TGGACAAGTT CGTCAAAGAA CTATTGTCGA 301 GTGATGCGAT GAAAGAATAT AACAGGGCTC GAGTCTACCT GGATGAAAAC TACAAATCCC 361 AGGAGCACTT CACGGCACTA GGAAGCTTTT ATTTTCTTCA TGAGTCCTTA AAAAACATCT 421 ACCAGTTTGA CTTTAAAGCT AAGAAGTATA GAAAGGTCGC TGGCAAAGAG ATCTACTCGG 481 ATACCTTAGA GAGCACGCCC ATGCTGGAGA AGGAGAAGTT TCCGCAGGAC TACTTCCCCG 541 AGTGCAAATG GTCAAGAAAA GGCTTCATCC GGACGAGGTG GTGCATTGCA GACTGTGCCT 601 TTGACTTGGT GAATATCCAT CTTTTCCATG ATGCTTCCAA TCTGGTCGCC TGGGAAACAA 661 GCCCTTCCGT GTACTCGGGA ATCCGGCACA AGGCACTGGG CTACGTGCTG GACAGAATCA 721 TTGATCAGCG ATTCGAGAAG GTTTCCTACT TTGTATTTGG TGATTTCAAC TTCCGGCTGG 781 ATTCCAAGTC CGTCGTGGAG ACGCTCTGCA CAAAAGCCAC CATGCAGACG GTCCGGGCCG 841 CCGACACCAA TGAAGTGGTG AAGCTCATAT TTCGTGAGTC GGACAACGAC CGGAAGGTTA 901 TGCTCCAGTT AGAAAAGAAA CTCTTCGACT ACTTCAACCA GGAGGTTTTC CGAGACAACA 961 ACGGCACCGC GCTCTTGGAG TTTGACAAGG AGTTGTCTGT CTTTAAGGAC AGACTGTATG 1021 AACTGGACAT CTCGTTCCCT CCCAGCTACC CGTACAGTGA GGACGCCCGC CAGGGTGAGC 1081 AGTACATGAA CACCCGGTGC CCAGCCTGGT GTGACCGCAT CCTCATGTCC CCGTCTGCCA 1141 AGGAGCTGGT GCTGCGGTCG GAGAGCGAGG AGAAGGTTGT CACCTATGAC CACATTGGGC 1201 CCAACGTCTG CATGGGAGAC CACAAGCCCG TGTTCCTGGC CTTCCGAATC ATGCCCGGGG 1261 CAGGTAAACC TCATGCCCAT GTGCACAAGT GTTGTGTCGT GCAGTTGCCA ACTTTCTTGT 1321 ACAAAGTtgg cattataaga aagcattgct tatcaatttg ttgcaacgaa c