Construct: ORF ccsbBroadEn_00884

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF016519.1_s300c1, BRDN0000385507
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
ITGA5 (3678)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 3678 ITGA5 integrin subunit alpha 5 NM_002205.5 100% 100%
2 human 3678 ITGA5 integrin subunit alpha 5 XM_024448970.1 51.9% 51.9% 0_1ins1512
3 mouse 16402 Itga5 integrin alpha 5 (fibronect... NM_010577.4 87.2% 90.4% (many diffs)
4 mouse 16402 Itga5 integrin alpha 5 (fibronect... NM_001314041.1 60.2% 62.6% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
3213
ORF length:
3147
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGGG GAGCCGGACG CCAGAGTCCC CTCTCCACGC CGTGCAGCTG CGCTGGGGCC
121CCCGGCGCCG ACCCCCGCTG CTGCCGCTGC TGTTGCTGCT GCTGCCGCCG CCACCCAGGG
181TCGGGGGCTT CAACTTAGAC GCGGAGGCCC CAGCAGTACT CTCGGGGCCC CCGGGCTCCT
241TCTTCGGATT CTCAGTGGAG TTTTACCGGC CGGGAACAGA CGGGGTCAGT GTGCTGGTGG
301GAGCACCCAA GGCTAATACC AGCCAGCCAG GAGTGCTGCA GGGTGGTGCT GTCTACCTCT
361GTCCTTGGGG TGCCAGCCCC ACACAGTGCA CCCCCATTGA ATTTGACAGC AAAGGCTCTC
421GGCTCCTGGA GTCCTCACTG TCCAGCTCAG AGGGAGAGGA GCCTGTGGAG TACAAGTCCT
481TGCAGTGGTT CGGGGCAACA GTTCGAGCCC ATGGCTCCTC CATCTTGGCA TGCGCTCCAC
541TGTACAGCTG GCGCACAGAG AAGGAGCCAC TGAGCGACCC CGTGGGCACC TGCTACCTCT
601CCACAGATAA CTTCACCCGA ATTCTGGAGT ATGCACCCTG CCGCTCAGAT TTCAGCTGGG
661CAGCAGGACA GGGTTACTGC CAAGGAGGCT TCAGTGCCGA GTTCACCAAG ACTGGCCGTG
721TGGTTTTAGG TGGACCAGGA AGCTATTTCT GGCAAGGCCA GATCCTGTCT GCCACTCAGG
781AGCAGATTGC AGAATCTTAT TACCCCGAGT ACCTGATCAA CCTGGTTCAG GGGCAGCTGC
841AGACTCGCCA GGCCAGTTCC ATCTATGATG ACAGCTACCT AGGATACTCT GTGGCTGTTG
901GTGAATTCAG TGGTGATGAC ACAGAAGACT TTGTTGCTGG TGTGCCCAAA GGGAACCTCA
961CTTACGGCTA TGTCACCATC CTTAATGGCT CAGACATTCG ATCCCTCTAC AACTTCTCAG
1021GGGAACAGAT GGCCTCCTAC TTTGGCTATG CAGTGGCCGC CACAGACGTC AATGGGGACG
1081GGCTGGATGA CTTGCTGGTG GGGGCACCCC TGCTCATGGA TCGGACCCCT GACGGGCGGC
1141CTCAGGAGGT GGGCAGGGTC TACGTCTACC TGCAGCACCC AGCCGGCATA GAGCCCACGC
1201CCACCCTTAC CCTCACTGGC CATGATGAGT TTGGCCGATT TGGCAGCTCC TTGACCCCCC
1261TGGGGGACCT GGACCAGGAT GGCTACAATG ATGTGGCCAT CGGGGCTCCC TTTGGTGGGG
1321AGACCCAGCA GGGAGTAGTG TTTGTATTTC CTGGGGGCCC AGGAGGGCTG GGCTCTAAGC
1381CTTCCCAGGT TCTGCAGCCC CTGTGGGCAG CCAGCCACAC CCCAGACTTC TTTGGCTCTG
1441CCCTTCGAGG AGGCCGAGAC CTGGATGGCA ATGGATATCC TGATCTGATT GTGGGGTCCT
1501TTGGTGTGGA CAAGGCTGTG GTATACAGGG GCCGCCCCAT CGTGTCCGCT AGTGCCTCCC
1561TCACCATCTT CCCCGCCATG TTCAACCCAG AGGAGCGGAG CTGCAGCTTA GAGGGGAACC
1621CTGTGGCCTG CATCAACCTT AGCTTCTGCC TCAATGCTTC TGGAAAACAC GTTGCTGACT
1681CCATTGGTTT CACAGTGGAA CTTCAGCTGG ACTGGCAGAA GCAGAAGGGA GGGGTACGGC
1741GGGCACTGTT CCTGGCCTCC AGGCAGGCAA CCCTGACCCA GACCCTGCTC ATCCAGAATG
1801GGGCTCGAGA GGATTGCAGA GAGATGAAGA TCTACCTCAG GAACGAGTCA GAATTTCGAG
1861ACAAACTCTC GCCGATTCAC ATCGCTCTCA ACTTCTCCTT GGACCCCCAA GCCCCAGTGG
1921ACAGCCACGG CCTCAGGCCA GCCCTACATT ATCAGAGCAA GAGCCGGATA GAGGACAAGG
1981CTCAGATCTT GCTGGACTGT GGAGAAGACA ACATCTGTGT GCCTGACCTG CAGCTGGAAG
2041TGTTTGGGGA GCAGAACCAT GTGTACCTGG GTGACAAGAA TGCCCTGAAC CTCACTTTCC
2101ATGCCCAGAA TGTGGGTGAG GGTGGCGCCT ATGAGGCTGA GCTTCGGGTC ACCGCCCCTC
2161CAGAGGCTGA GTACTCAGGA CTCGTCAGAC ACCCAGGGAA CTTCTCCAGC CTGAGCTGTG
2221ACTACTTTGC CGTGAACCAG AGCCGCCTGC TGGTGTGTGA CCTGGGCAAC CCCATGAAGG
2281CAGGAGCCAG TCTGTGGGGT GGCCTTCGGT TTACAGTCCC TCATCTCCGG GACACTAAGA
2341AAACCATCCA GTTTGACTTC CAGATCCTCA GCAAGAATCT CAACAACTCG CAAAGCGACG
2401TGGTTTCCTT TCGGCTCTCC GTGGAGGCTC AGGCCCAGGT CACCCTGAAC GGTGTCTCCA
2461AGCCTGAGGC AGTGCTATTC CCAGTAAGCG ACTGGCATCC CCGAGACCAG CCTCAGAAGG
2521AGGAGGACCT GGGACCTGCT GTCCACCATG TCTATGAGCT CATCAACCAA GGCCCCAGCT
2581CCATTAGCCA GGGTGTGCTG GAACTCAGCT GTCCCCAGGC TCTGGAAGGT CAGCAGCTCC
2641TATATGTGAC CAGAGTTACG GGACTCAACT GCACCACCAA TCACCCCATT AACCCAAAGG
2701GCCTGGAGTT GGATCCCGAG GGTTCCCTGC ACCACCAGCA AAAACGGGAA GCTCCAAGCC
2761GCAGCTCTGC TTCCTCGGGA CCTCAGATCC TGAAATGCCC GGAGGCTGAG TGTTTCAGGC
2821TGCGCTGTGA GCTCGGGCCC CTGCACCAAC AAGAGAGCCA AAGTCTGCAG TTGCATTTCC
2881GAGTCTGGGC CAAGACTTTC TTGCAGCGGG AGCACCAGCC ATTTAGCCTG CAGTGTGAGG
2941CTGTGTACAA AGCCCTGAAG ATGCCCTACC GAATCCTGCC TCGGCAGCTG CCCCAAAAAG
3001AGCGTCAGGT GGCCACAGCT GTGCAATGGA CCAAGGCAGA AGGCAGCTAT GGCGTCCCAC
3061TGTGGATCAT CATCCTAGCC ATCCTGTTTG GCCTCCTGCT CCTAGGTCTA CTCATCTACA
3121TCCTCTACAA GCTTGGATTC TTCAAACGCT CCCTCCCATA TGGCACCGCC ATGGAAAAAG
3181CTCAGCTCAA GCCTCCAGCC ACCTCTGATG CCTGCCCAAC TTTCTTGTAC AAAGTtggca
3241ttataagaaa gcattgctta tcaatttgtt gcaacgaac

Download FASTA (ORF) (Full)