Construct: ORF ccsbBroadEn_00912

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF005879.1_s300c1, BRDN0000391124
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
KLC1 (3831)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 3831 KLC1 kinesin light chain 1 NM_005552.4 100% 100%
2 human 3831 KLC1 kinesin light chain 1 NM_182923.3 97.2% 95.1% (many diffs)
3 human 3831 KLC1 kinesin light chain 1 NM_001130107.1 89.7% 89.6% (many diffs)
4 mouse 16593 Klc1 kinesin light chain 1 NM_001025359.2 86.3% 97.8% (many diffs)
5 mouse 16593 Klc1 kinesin light chain 1 XM_011244001.2 86.3% 97.8% (many diffs)
6 mouse 16593 Klc1 kinesin light chain 1 XM_006515495.2 84.9% 96.4% (many diffs)
7 mouse 16593 Klc1 kinesin light chain 1 NM_001025363.2 84.8% 96.2% (many diffs)
8 mouse 16593 Klc1 kinesin light chain 1 NM_001025358.2 84.8% 96.2% (many diffs)
9 mouse 16593 Klc1 kinesin light chain 1 XM_006515492.2 84.5% 94.9% (many diffs)
10 mouse 16593 Klc1 kinesin light chain 1 NM_001025362.2 84.5% 92.3% (many diffs)
11 mouse 16593 Klc1 kinesin light chain 1 XM_006515494.2 84.5% 92.3% (many diffs)
12 mouse 16593 Klc1 kinesin light chain 1 XM_006515499.2 83.4% 94.8% (many diffs)
13 mouse 16593 Klc1 kinesin light chain 1 XM_006515498.2 83.3% 94.8% (many diffs)
14 mouse 16593 Klc1 kinesin light chain 1 NM_008450.2 83.2% 94.6% (many diffs)
15 mouse 16593 Klc1 kinesin light chain 1 XM_017314964.1 83.1% 93.4% (many diffs)
16 mouse 16593 Klc1 kinesin light chain 1 XM_017314965.1 81.8% 93.2% (many diffs)
17 mouse 16593 Klc1 kinesin light chain 1 NM_001025361.2 79.1% 88.3% (many diffs)
18 mouse 16593 Klc1 kinesin light chain 1 NM_001025360.2 78.4% 88.1% (many diffs)
19 mouse 16593 Klc1 kinesin light chain 1 XM_017314963.1 77.8% 86.9% (many diffs)
20 mouse 16593 Klc1 kinesin light chain 1 NM_001081959.1 77.1% 86.8% (many diffs)
21 mouse 16593 Klc1 kinesin light chain 1 XR_001780416.1 21.8% (many diffs)
22 mouse 16593 Klc1 kinesin light chain 1 XR_001780417.1 21.7% (many diffs)
23 mouse 16593 Klc1 kinesin light chain 1 XR_001780413.1 19.8% (many diffs)
24 mouse 16593 Klc1 kinesin light chain 1 XR_001780415.1 19.8% (many diffs)
25 mouse 16593 Klc1 kinesin light chain 1 XR_001780414.1 19.5% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1746
ORF length:
1680
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGTA TGACAACATG TCCACAATGG TGTACATAAA GGAAGACAAG TTGGAGAAGC
121TTACACAGGA TGAAATTATT TCTAAGACAA AGCAAGTAAT TCAGGGGCTG GAAGCTTTGA
181AGAATGAGCA CAATTCCATT TTACAAAGTT TGCTGGAGAC ACTGAAGTGT TTGAAGAAAG
241ATGATGAAAG TAATTTGGTG GAGGAGAAAT CAAACATGAT CCGGAAGTCA CTGGAGATGT
301TGGAGCTCGG CCTGAGTGAG GCACAGGTTA TGATGGCTTT GTCAAATCAC CTGAATGCTG
361TGGAGTCCGA GAAGCAGAAA CTGCGTGCGC AGGTTCGTCG TCTGTGCCAG GAGAATCAGT
421GGCTACGGGA TGAACTGGCC AACACGCAGC AGAAACTGCA GAAGAGTGAG CAGTCTGTGG
481CTCAACTGGA GGAGGAGAAG AAGCATCTGG AGTTTATGAA TCAGCTAAAA AAATATGATG
541ACGACATTTC CCCATCCGAG GACAAAGACA CTGATTCTAC CAAAGAGCCT CTGGATGACC
601TTTTCCCCAA TGATGAAGAC GACCCAGGGC AAGGAATCCA GCAGCAGCAC AGCAGTGCAG
661CCGCGGCTGC CCAGCAGGGC GGCTACGAGA TCCCCGCGCG GCTGCGGACG CTCCACAACC
721TGGTGATCCA GTACGCCTCG CAGGGGCGCT ACGAGGTAGC TGTGCCCCTC TGCAAGCAGG
781CCCTGGAGGA CCTGGAGAAG ACTTCAGGAC ACGACCACCC GGACGTGGCC ACCATGCTCA
841ACATCCTGGC CTTGGTGTAC AGGGATCAGA ATAAATACAA AGATGCAGCT AACCTACTGA
901ATGATGCCTT GGCTATTCGT GAGAAAACTT TGGGCAAAGA TCATCCTGCG GTGGCGGCGA
961CTTTGAATAA CCTTGCAGTC CTTTATGGTA AAAGAGGGAA GTACAAAGAA GCAGAGCCGT
1021TGTGTAAAAG AGCTCTGGAA ATCCGAGAAA AGGTTTTGGG GAAGGATCAC CCCGATGTTG
1081CCAAGCAGTT AAATAACTTG GCCTTACTGT GCCAGAACCA GGGCAAGTAT GAAGAAGTAG
1141AATATTATTA TCAAAGAGCC CTCGAGATCT ACCAGACAAA ACTGGGACCT GATGACCCCA
1201ACGTGGCTAA GACGAAAAAT AACCTGGCAT CCTGCTATTT GAAACAAGGA AAGTTCAAGC
1261AAGCAGAAAC ACTGTACAAA GAGATTCTCA CTCGTGCACA TGAAAGGGAG TTTGGTTCTG
1321TAGATGATGA AAATAAACCC ATCTGGATGC ATGCTGAAGA AAGAGAAGAA TGCAAAGGAA
1381AGCAAAAGGA TGGGACATCT TTTGGAGAGT ATGGCGGCTG GTACAAAGCC TGCAAAGTTG
1441ATAGTCCAAC TGTTACAACC ACTCTAAAAA ACCTTGGGGC ACTTTACAGA CGTCAAGGCA
1501AATTTGAAGC TGCAGAAACG TTAGAAGAAG CTGCTATGAG GTCTCGTAAA CAGGGTCTTG
1561ACAATGTTCA CAAACAGAGG GTGGCAGAAG TGCTCAATGA CCCTGAGAAC ATGGAGAAGC
1621GCAGGAGCCG TGAGAGCCTC AACGTGGACG TGGTCAAGTA CGAGAGTGGC CCTGACGGAG
1681GGGAGGAAGT GAGTATGAGC GTAGAGTGGA ACGGGATGAG GAAAATGAAG CTCGGGCTGG
1741TTAACTGCCC AACTTTCTTG TACAAAGTtg gcattataag aaagcattgc ttatcaattt
1801gttgcaacga ac

Download FASTA (ORF) (Full)