Construct: ORF ccsbBroadEn_00945

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF014403.1_s300c1, BRDN0000393280
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
LMNA (4000)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 4000 LMNA lamin A/C NM_001282625.1 100% 100%
2 human 4000 LMNA lamin A/C NM_005572.3 100% 100%
3 human 4000 LMNA lamin A/C NM_001282626.2 92.8% 92.2% (many diffs)
4 human 4000 LMNA lamin A/C NM_170708.3 88.2% 85.4% (many diffs)
5 human 4000 LMNA lamin A/C NM_170707.4 85.9% 85.2% (many diffs)
6 human 4000 LMNA lamin A/C NM_001282624.1 84% 77.5% (many diffs)
7 human 4000 LMNA lamin A/C XM_011509533.1 68.7% 67.4% (many diffs)
8 human 4000 LMNA lamin A/C NM_001257374.3 66.5% 65.2% (many diffs)
9 human 4000 LMNA lamin A/C XR_921781.2 52.5% (many diffs)
10 human 4000 LMNA lamin A/C XM_011509534.2 51.5% 39.5% (many diffs)
11 mouse 16905 Lmna lamin A NM_001111102.2 89.7% 97.2% (many diffs)
12 mouse 16905 Lmna lamin A NM_001002011.3 76.8% 83.6% (many diffs)
13 mouse 16905 Lmna lamin A XM_006501073.1 76.8% 83.6% (many diffs)
14 mouse 16905 Lmna lamin A NM_019390.3 71.1% 76.6% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1782
ORF length:
1716
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGGA GACCCCGTCC CAGCGGCGCG CCACCCGCAG CGGGGCGCAG GCCAGCTCCA
121CTCCGCTGTC GCCCACCCGC ATCACCCGGC TGCAGGAGAA GGAGGACCTG CAGGAGCTCA
181ATGATCGCTT GGCGGTCTAC ATCGACCGTG TGCGCTCGCT GGAAACGGAG AACGCAGGGC
241TGCGCCTTCG CATCACCGAG TCTGAAGAGG TGGTCAGCCG CGAGGTGTCC GGCATCAAGG
301CCGCCTACGA GGCCGAGCTC GGGGATGCCC GCAAGACCCT TGACTCAGTA GCCAAGGAGC
361GCGCCCGCCT GCAGCTGGAG CTGAGCAAAG TGCGTGAGGA GTTTAAGGAG CTGAAAGCGC
421GCAATACCAA GAAGGAGGGT GACCTGATAG CTGCTCAGGC TCGGCTGAAG GACCTGGAGG
481CTCTGCTGAA CTCCAAGGAG GCCGCACTGA GCACTGCTCT CAGTGAGAAG CGCACGCTGG
541AGGGCGAGCT GCATGATCTG CGGGGCCAGG TGGCCAAGCT TGAGGCAGCC CTAGGTGAGG
601CCAAGAAGCA ACTTCAGGAT GAGATGCTGC GGCGGGTGGA TGCTGAGAAC AGGCTGCAGA
661CCATGAAGGA GGAACTGGAC TTCCAGAAGA ACATCTACAG TGAGGAGCTG CGTGAGACCA
721AGCGCCGTCA TGAGACCCGA CTGGTGGAGA TTGACAATGG GAAGCAGCGT GAGTTTGAGA
781GCCGGCTGGC GGATGCGCTG CAGGAACTGC GGGCCCAGCA TGAGGACCAG GTGGAGCAGT
841ATAAGAAGGA GCTGGAGAAG ACTTATTCTG CCAAGCTGGA CAATGCCAGG CAGTCTGCTG
901AGAGGAACAG CAACCTGGTG GGGGCTGCCC ACGAGGAGCT GCAGCAGTCG CGCATCCGCA
961TCGACAGCCT CTCTGCCCAG CTCAGCCAGC TCCAGAAGCA GCTGGCAGCC AAGGAGGCGA
1021AGCTTCGAGA CCTGGAGGAC TCACTGGCCC GTGAGCGGGA CACCAGCCGG CGGCTGCTGG
1081CGGAAAAGGA GCGGGAGATG GCCGAGATGC GGGCAAGGAT GCAGCAGCAG CTGGACGAGT
1141ACCAGGAGCT TCTGGACATC AAGCTGGCCC TGGACATGGA GATCCACGCC TACCGCAAGC
1201TCTTGGAGGG CGAGGAGGAG AGGCTACGCC TGTCCCCCAG CCCTACCTCG CAGCGCAGCC
1261GTGGCCGTGC TTCCTCTCAC TCATCCCAGA CACAGGGTGG GGGCAGCGTC ACCAAAAAGC
1321GCAAACTGGA GTCCACTGAG AGCCGCAGCA GCTTCTCACA GCACGCACGC ACTAGCGGGC
1381GCGTGGCCGT GGAGGAGGTG GATGAGGAGG GCAAGTTTGT CCGGCTGCGC AACAAGTCCA
1441ATGAGGACCA GTCCATGGGC AATTGGCAGA TCAAGCGCCA GAATGGAGAT GATCCCTTGC
1501TGACTTACCG GTTCCCACCA AAGTTCACCC TGAAGGCTGG GCAGGTGGTG ACGATCTGGG
1561CTGCAGGAGC TGGGGCCACC CACAGCCCCC CTACCGACCT GGTGTGGAAG GCACAGAACA
1621CCTGGGGCTG CGGGAACAGC CTGCGTACGG CTCTCATCAA CTCCACTGGG GAAGAAGTGG
1681CCATGCGCAA GCTGGTGCGC TCAGTGACTG TGGTTGAGGA CGACGAGGAT GAGGATGGAG
1741ATGACCTGCT CCATCACCAC CACGTGAGTG GTAGCCGCCG CTGCCCAACT TTCTTGTACA
1801AAGTtggcat tataagaaag cattgcttat caatttgttg caacgaac

Download FASTA (ORF) (Full)

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