Construct: ORF ccsbBroadEn_01016

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF012281.1_s300c1, BRDN0000393277
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
MIPEP (4285)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 4285 MIPEP mitochondrial intermediate ... NM_005932.4 99.9% 99.8% 1462A>G
2 human 4285 MIPEP mitochondrial intermediate ... XM_011535097.2 91.1% 91% 1_2delATins188;1276A>G
3 human 4285 MIPEP mitochondrial intermediate ... XM_011535098.3 86.5% 86.5% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
2205
ORF length:
2139
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGCT GTGCGTCGGA AGGCTGGGCG GCTTGGGAGC CAGAGCAGCA GCTCTGCCGC
121CCCGCCGGGC GGGCCGGGGA AGCCTCGAAG CCGGGATCCG GGCCCGAAGG GTCAGCACCA
181GCTGGTCTCC CGTGGGCGCC GCCTTCAATG TCAAGCCCCA GGGCAGCCGC TTGGACCTGT
241TCGGCGAGCG CCGGGGTCTT TTTGGAGTTC CTGAGCTGAG TGCCCCAGAA GGATTTCATA
301TTGCACAAGA AAAAGCCTTG AGAAAGACAG AATTGCTTGT GGACCGTGCA TGTTCCACCC
361CACCTGGGCC CCAGACCGTG CTGATCTTCG ATGAGCTCTC GGATTCCTTA TGCAGAGTGG
421CCGACTTGGC TGATTTTGTG AAAATCGCTC ACCCTGAGCC AGCATTCAGA GAAGCTGCGG
481AAGAAGCTTG TAGAAGTATT GGCACCATGG TAGAGAAGTT GAACACAAAT GTGGATTTAT
541ATCAAAGTTT GCAAAAATTA CTAGCTGATA AAAAACTTGT GGATTCCCTT GATCCAGAAA
601CAAGGCGAGT GGCTGAACTG TTTATGTTTG ATTTTGAAAT TAGTGGAATC CATCTAGACA
661AAGAAAAGCG TAAAAGAGCA GTGGACCTCA ATGTTAAAAT CTTGGATTTG AGTAGTACAT
721TTCTTATGGG AACCAATTTT CCCAACAAGA TTGAGAAGCA TCTCTTACCA GAACACATTC
781GTCGTAACTT TACATCTGCT GGGGATCATA TCATAATTGA TGGTCTCCAC GCAGAATCAC
841CAGATGACTT GGTGCGAGAA GCTGCTTATA AAATTTTTCT TTATCCCAAT GCTGGTCAAT
901TGAAATGTTT AGAAGAATTG CTCAGCAGCA GAGATCTTCT GGCAAAGTTG GTGGGGTATT
961CCACGTTTTC TCACAGGGCT CTCCAAGGAA CGATAGCTAA AAATCCAGAG ACTGTCATGC
1021AGTTCCTTGA AAAACTATCT GACAAACTTT CTGAAAGAAC TCTGAAAGAT TTTGAGATGA
1081TACGAGGGAT GAAAATGAAA CTGAATCCTC AAAATTCCGA AGTAATGCCC TGGGACCCCC
1141CTTACTACAG TGGTGTGATT CGTGCAGAAA GGTATAATAT TGAGCCCAGC CTATATTGCC
1201CGTTTTTCTC TCTTGGAGCA TGCATGGAAG GCCTGAATAT TTTGCTTAAC AGACTGTTGG
1261GGATTTCATT ATATGCAGAG CAGCCTGCAA AAGGAGAGGT GTGGAGCGAA GATGTCCGAA
1321AACTGGCTGT TGTTCATGAA TCTGAAGGAT TGTTGGGGTA CATTTACTGT GATTTTTTTC
1381AGCGAGCAGA CAAACCACAT CAGGATTGCC ATTTCACTAT CCGTGGAGGC AGACTAAAGG
1441AAGATGGAGA CTATCAACTC CCAGTTGTAG TTCTTATGCT GAATCTTCCC CGTTCCTCAA
1501GGAGTTCTCC AACTTTGCTA ACTCCTGGCA TGATGGAAAA TCTTTTCCAT GAAATGGGAC
1561ATGCCATGCA TTCAATGCTA GGACGTACTC GTTACCAACA CGTCACTGGG ACCAGGTGCC
1621CTACTGATTT TGCTGAGGTT CCTTCTATTC TGATGGAGTA CTTTGCAAAT GATTATCGAG
1681TAGTTAACCA ATTTGCCAGA CATTATCAGA CTGGACAGCC ACTGCCAAAA AATATGGTGT
1741CTCGTCTTTG TGAATCTAAA AAGGTTTGTG CTGCAGCTGA TATGCAACTT CAGGTCTTTT
1801ATGCCACTCT GGATCAAATC TACCATGGGA AGCATCCCCT GAGGAATTCA ACCACAGACA
1861TTCTCAAGGA AACACAAGAG AAATTCTATG GCCTACCATA TGTTCCAAAT ACTGCCTGGC
1921AGCTGCGATT CAGCCACCTC GTGGGGTATG GTGCTAGATA TTACTCTTAC CTCATGTCCA
1981GAGCGGTCGC CTCCATGGTT TGGAAGGAGT GTTTTCTACA GGATCCTTTC AACAGGGCTG
2041CCGGGGAGCG CTATCGCAGG GAGATGCTGG CCCACGGTGG AGGCAGGGAG CCCATGCTCA
2101TGGTTGAAGG TATGCTTCAG AAGTGTCCTT CTGTTGATGA CTTCGTAAGT GCCCTCGTTT
2161CCGACTTGGA TCTGGACTTC GAAACTTTCC TCATGGATTC TGAATACCCA ACTTTCTTGT
2221ACAAAGTtgg cattataaga aagcattgct tatcaatttg ttgcaacgaa c

Download FASTA (ORF) (Full)