Construct: ORF ccsbBroadEn_01049

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF003562.1_s300c1, BRDN0000398601
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
MTNR1A (4543)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 4543 MTNR1A melatonin receptor 1A NM_005958.4 100% 100%
2 human 4543 MTNR1A melatonin receptor 1A XM_011532002.3 75.7% 75.7% 0_1ins255
3 mouse 17773 Mtnr1a melatonin receptor 1A XM_006509291.2 68.3% 72% (many diffs)
4 mouse 17773 Mtnr1a melatonin receptor 1A XM_011242176.1 68% 72% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
1119
ORF length:
1050
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG
61TTGGCACCAT GCAGGGCAAC GGCAGCGCGC TGCCCAACGC CTCCCAGCCC GTGCTCCGCG
121GGGACGGCGC GCGGCCCTCG TGGCTGGCGT CCGCCCTGGC CTGCGTCCTC ATCTTCACCA
181TCGTGGTGGA CATCCTGGGC AACCTCCTGG TCATCCTGTC GGTGTATCGG AACAAGAAGC
241TCAGGAACGC AGGAAACATC TTTGTGGTGA GCTTAGCGGT GGCAGACCTG GTGGTGGCCA
301TTTATCCGTA CCCGTTGGTG CTGATGTCGA TATTTAACAA CGGGTGGAAC CTGGGCTATC
361TGCACTGCCA AGTCAGTGGG TTCCTGATGG GCCTGAGCGT CATCGGCTCC ATATTCAACA
421TCACCGGCAT CGCCATCAAC CGCTACTGCT ACATCTGCCA CAGTCTCAAG TACGACAAAC
481TGTACAGCAG CAAGAACTCC CTCTGCTACG TGCTCCTCAT ATGGCTCCTG ACGCTGGCGG
541CCGTCCTGCC CAACCTCCGT GCAGGGACTC TCCAGTACGA CCCGAGGATC TACTCGTGCA
601CCTTCGCCCA GTCCGTCAGC TCCGCCTACA CCATCGCCGT GGTGGTTTTC CACTTCCTCG
661TCCCCATGAT CATAGTCATC TTCTGTTACC TGAGAATATG GATCCTGGTT CTCCAGGTCA
721GACAGAGGGT GAAACCTGAC CGCAAACCCA AACTGAAACC ACAGGACTTC AGGAATTTTG
781TCACCATGTT TGTGGTTTTT GTCCTTTTTG CCATTTGCTG GGCTCCTCTG AACTTCATTG
841GCCTGGCCGT GGCCTCTGAC CCCGCCAGCA TGGTGCCTAG GATCCCAGAG TGGCTGTTTG
901TGGCCAGTTA CTACATGGCG TATTTCAACA GCTGCCTCAA TGCCATTATA TACGGGCTAC
961TGAACCAAAA TTTCAGGAAG GAATACAGGA GAATTATAGT CTCGCTCTGT ACAGCCAGGG
1021TGTTCTTTGT GGACAGCTCT AACGACGTGG CCGATAGGGT TAAATGGAAA CCGTCTCCAC
1081TGATGACCAA CAATAATGTA GTAAAGGTGG ACTCCGTTTT GCCAACTTTC TTGTACAAAG
1141Ttggcattat aagaaagcat tgcttatcaa tttgttgcaa cgaac

Download FASTA (ORF) (Full)

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