Construct: ORF ccsbBroadEn_01082

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF005993.1_s300c1, BRDN0000387663
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
NEDD8 (4738)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 4738 NEDD8 NEDD8 ubiquitin like modifier NM_006156.3 100% 100%
2 human 100528064 NEDD8-MDP1 NEDD8-MDP1 readthrough NM_001199823.2 36.1% 28.4% (many diffs)
3 human 100528064 NEDD8-MDP1 NEDD8-MDP1 readthrough NR_137631.1 34.7% (many diffs)
4 human 100528064 NEDD8-MDP1 NEDD8-MDP1 readthrough NR_137630.1 34% (many diffs)
5 human 100528064 NEDD8-MDP1 NEDD8-MDP1 readthrough NR_137632.1 24.1% (many diffs)
6 mouse 18002 Nedd8 neural precursor cell expre... NM_008683.3 92.6% 98.7% (many diffs)
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Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
312
ORF length:
243
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG
61TTGGCACCAT GCTAATTAAA GTGAAGACGC TGACCGGAAA GGAGATTGAG ATTGACATTG
121AACCTACAGA CAAGGTGGAG CGAATCAAGG AGCGTGTGGA GGAGAAAGAG GGAATCCCCC
181CACAACAGCA GAGGCTCATC TACAGTGGCA AGCAGATGAA TGATGAGAAG ACAGCAGCTG
241ATTACAAGAT TTTAGGTGGT TCAGTCCTTC ACCTGGTGTT GGCTCTGAGA GGAGGAGGTG
301GTCTTAGGCA GTTGCCAACT TTCTTGTACA AAGTtggcat tataagaaag cattgcttat
361caatttgttg caacgaac

Download FASTA (ORF) (Full)