Construct: ORF ccsbBroadEn_01119
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF010288.1_s300c1, BRDN0000397649
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- OMP (4975)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 4975 | OMP | olfactory marker protein | NM_006189.1 | 100% | 100% | |
| 2 | mouse | 18378 | Omp | olfactory marker protein | NM_011010.2 | 88.5% | 89.5% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 555
- ORF length:
- 489
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGGC GGAGGACAGG CCGCAGCAGC CGCAGCTGGA CATGCCGCTG GTCCTGGACC 121 AGGGCCTGAC CAGGCAGATG CGGCTACGCG TGGAGAGCCT GAAGCAGCGC GGGGAGAAGC 181 GCCAGGATGG GGAGAAGCTG CTGCAGCCAG CGGAGTCTGT GTACCGCCTC AACTTCACCC 241 AGCAGCAGCG GCTACAGTTC GAGCGCTGGA ATGTCGTGCT GGACAAGCCG GGCAAGGTCA 301 CCATCACAGG CACCTCGCAG AACTGGACGC CTGACCTCAC CAACCTCATG ACACGCCAGC 361 TGCTGGACCC CACTGCCATC TTCTGGCGCA AGGAGGACTC GGATGCCATA GATTGGAATG 421 AGGCCGACGC CCTGGAGTTT GGGGAGCGCC TGTCGGACCT GGCCAAGATC CGCAAGGTCA 481 TGTACTTCCT CGTCACCTTT GGCGAGGGTG TGGAGCCCGC CAACCTCAAG GCCTCCGTGG 541 TTTTTAACCA GCTCTGCCCA ACTTTCTTGT ACAAAGTtgg cattataaga aagcattgct 601 tatcaatttg ttgcaacgaa c