Construct: ORF ccsbBroadEn_01172

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF013409.1_s300c1, BRDN0000393681
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
PEPD (5184)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 5184 PEPD peptidase D NM_000285.4 100% 100%
2 human 5184 PEPD peptidase D NM_001166056.2 91.6% 91.6% 547_548ins123
3 human 5184 PEPD peptidase D NM_001166057.2 87% 87% 199_200ins192
4 mouse 18624 Pepd peptidase D NM_008820.2 84.1% 89% (many diffs)
5 mouse 18624 Pepd peptidase D XM_006539622.2 66.6% 69.7% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1545
ORF length:
1479
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGGC GGCGGCCACC GGACCCTCGT TTTGGCTGGG GAATGAAACC CTGAAGGTGC
121CGCTGGCGCT CTTTGCCTTG AACCGGCAGC GCCTGTGTGA GCGGCTGCGG AAGAACCCTG
181CTGTGCAGGC CGGCTCCATC GTGGTCCTGC AGGGCGGGGA GGAGACTCAG CGCTACTGCA
241CCGACACCGG GGTCCTCTTC CGCCAGGAGT CCTTCTTTCA CTGGGCGTTC GGTGTCACTG
301AGCCAGGCTG CTATGGTGTC ATCGATGTTG ACACTGGGAA GTCGACCCTG TTTGTGCCCA
361GGCTTCCTGC CAGCCATGCC ACCTGGATGG GAAAGATCCA TTCCAAGGAG CACTTCAAGG
421AGAAGTATGC CGTGGACGAC GTCCAGTACG TAGATGAGAT TGCCAGCGTC CTGACGTCAC
481AGAAGCCCTC TGTCCTCCTC ACTTTGCGTG GCGTCAACAC GGACAGCGGC AGTGTCTGCA
541GGGAGGCCTC CTTTGACGGC ATCAGCAAGT TCGAAGTCAA CAATACCATT CTTCACCCAG
601AGATCGTTGA GTGCCGAGTG TTTAAGACGG ATATGGAGCT GGAGGTTCTG CGCTATACCA
661ATAAAATCTC CAGCGAGGCC CACCGTGAGG TAATGAAGGC TGTAAAAGTG GGAATGAAAG
721AATATGAGTT GGAAAGCCTC TTCGAGCACT ACTGCTACTC CCGGGGCGGC ATGCGCCACA
781GCTCCTACAC CTGCATCTGC GGCAGTGGTG AGAACTCAGC CGTGCTACAC TACGGACACG
841CCGGAGCTCC CAACGACCGA ACGATCCAGA ATGGGGATAT GTGCCTGTTC GACATGGGCG
901GTGAGTATTA CTGCTTCGCT TCCGACATCA CCTGCTCCTT TCCCGCCAAC GGCAAGTTCA
961CTGCAGACCA GAAGGCCGTC TATGAGGCAG TGCTGCGGAG CTCCCGTGCC GTCATGGGTG
1021CCATGAAGCC AGGTGTCTGG TGGCCTGACA TGCACCGCCT GGCTGACCGC ATCCACCTGG
1081AGGAGCTGGC CCACATGGGC ATCCTGAGCG GCAGCGTGGA CGCCATGGTC CAGGCTCACC
1141TGGGGGCCGT GTTTATGCCT CACGGGCTTG GCCACTTCCT GGGCATTGAC GTGCACGACG
1201TGGGAGGCTA CCCAGAGGGC GTGGAGCGCA TCGACGAGCC CGGCCTGCGG AGCCTGCGCA
1261CTGCACGGCA CCTGCAGCCA GGCATGGTGC TCACCGTGGA GCCGGGCATC TACTTCATCG
1321ACCACCTCCT GGATGAGGCC CTGGCGGACC CGGCCCGCGC CTCCTTCCTT AACCGCGAGG
1381TCCTGCAGCG CTTTCGCGGT TTTGGCGGGG TCCGCATCGA GGAGGACGTC GTGGTGACTG
1441ACAGCGGCAT AGAGCTGCTG ACCTGCGTGC CCCGCACTGT GGAAGAGATT GAAGCATGCA
1501TGGCAGGCTG TGACAAGGCC TTTACCCCCT TCTCTGGCCC CAAGTACCCA ACTTTCTTGT
1561ACAAAGTtgg cattataaga aagcattgct tatcaatttg ttgcaacgaa c

Download FASTA (ORF) (Full)