Construct: ORF ccsbBroadEn_01251

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF018486.1_s300c1, BRDN0000396048
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
PPEF1 (5475)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 5475 PPEF1 protein phosphatase with EF... NM_006240.2 100% 100%
2 human 5475 PPEF1 protein phosphatase with EF... NM_152224.1 95.7% 95.7% 981_982ins84
3 human 5475 PPEF1 protein phosphatase with EF... NM_152226.1 90.5% 90.5% 1063_1064ins186
4 human 5475 PPEF1 protein phosphatase with EF... XM_017029612.1 86.2% 86.2% 0_1ins270
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
2025
ORF length:
1959
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGGG ATGCAGCAGT TCTTCAACGA AAACCAGGAG ATCTGACACA TCACTGAGAG
121CTGCGTTGAT CATCCAGAAC TGGTACCGAG GTTACAAAGC TCGACTGAAG GCCAGACAAC
181ACTATGCCCT CACCATCTTC CAGTCCATCG AATATGCTGA TGAACAAGGC CAAATGCAGT
241TATCCACCTT CTTTTCCTTC ATGTTGGAAA ACTACACACA TATACATAAG GAAGAGCTAG
301AATTAAGAAA TCAGTCTCTT GAAAGCGAAC AGGACATGAG GGATAGATGG GATTATGTGG
361ACTCGATAGA TGTCCCAGAC TCCTATAATG GTCCTCGGCT ACAATTTCCT CTCACTTGTA
421CGGATATTGA TTTACTTCTT GAGGCCTTCA AGGAACAACA GATACTTCAT GCCCATTATG
481TCTTAGAGGT GCTATTTGAA ACCAAGAAAG TCCTGAAGCA AATGCCGAAT TTCACTCACA
541TACAAACTTC TCCCTCCAAA GAGGTAACAA TCTGTGGTGA TTTGCATGGG AAACTGGATG
601ATCTTTTTTT GATCTTCTAC AAGAATGGTC TCCCCTCAGA GAGGAACCCG TATGTTTTTA
661ATGGTGACTT TGTAGATCGA GGAAAGAATT CCATAGAGAT CCTAATGATC CTGTGTGTGA
721GTTTTCTTGT CTACCCCAAT GACCTGCACT TGAACAGAGG GAACCACGAA GATTTTATGA
781TGAATCTGAG GTATGGCTTC ACGAAAGAAA TTTTGCATAA ATATAAGCTA CATGGAAAAA
841GAATCTTACA AATCTTGGAA GAATTCTATG CCTGGCTCCC AATCGGTACA ATCGTTGACA
901ATGAAATCCT GGTCATCCAT GGTGGGATAT CAGAGACCAC AGACTTGAAT TTACTCCACC
961GTGTAGAGAG GAACAAGATG AAATCTGTGC TGATACCACC AACGGAAACA AACAGAGACC
1021ATGACACTGA CTCGAAGCAC AATAAAGTAG GTGTGACTTT TAATGCACAT GGAAGAATCA
1081AAACAAATGG ATCTCCTACT GAACACTTAA CAGAGCATGA ATGGGAACAG ATTATTGATA
1141TTCTGTGGAG TGATCCCAGA GGCAAAAATG GCTGTTTTCC AAATACGTGC CGAGGAGGGG
1201GCTGCTATTT TGGACCAGAT GTTACTTCCA AGATTCTTAA TAAATACCAG TTGAAGATGC
1261TCATCAGGTC TCATGAATGT AAGCCCGAAG GGTATGAAAT CTGTCATGAT GGGAAGGTGG
1321TGACTATATT TTCTGCTTCT AATTATTATG AAGAAGGCAG CAATCGAGGA GCTTACATCA
1381AACTATGTTC TGGTACAACT CCTCGATTTT TCCAGTACCA AGTAACTAAA GCAACGTGCT
1441TTCAGCCTCT TCGCCAAAGA GTGGATACTA TGGAAAACAG CGCCATCAAG ATATTAAGAG
1501AGAGAGTGAT TTCACGAAAA AGTGACCTTA CTCGTGCTTT CCAACTTCAA GACCACAGAA
1561AATCAGGAAA ACTTTCTGTG AGCCAGTGGG CTTTTTGCAT GGAGAACATT TTGGGGCTGA
1621ACTTACCATG GAGATCCCTC AGTTCGAATC TGGTAAACAT AGACCAAAAT GGAAACGTTG
1681AATACATGTC CAGCTTCCAG AATATCCGCA TTGAAAAACC TGTACAAGAG GCTCATTCTA
1741CTCTAGTTGA AACTCTGTAC AGATACAGAT CTGACCTGGA AATCATATTT AATGCCATTG
1801ACACTGATCA CTCAGGCCTG ATCTCCGTGG AAGAATTTCG TGCCATGTGG AAACTTTTTA
1861GTTCTCACTA CAATGTTCAC ATTGATGATT CCCAAGTCAA TAAGCTTGCC AACATAATGG
1921ACTTGAACAA AGATGGAAGC ATTGACTTTA ATGAGTTTTT AAAGGCTTTC TATGTAGTGC
1981ATAGATATGA AGACTTGATG AAACCTGATG TCACCAACCT TGGCTACCCA ACTTTCTTGT
2041ACAAAGTtgg cattataaga aagcattgct tatcaatttg ttgcaacgaa c

Download FASTA (ORF) (Full)