Construct: ORF ccsbBroadEn_01288

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF002850.1_s300c1, BRDN0000392718
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
MAPK9 (5601)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 5601 MAPK9 mitogen-activated protein k... NM_001364608.2 100% 100%
2 human 5601 MAPK9 mitogen-activated protein k... NM_002752.5 100% 100%
3 human 5601 MAPK9 mitogen-activated protein k... NM_001364609.2 97.6% 97.8% (many diffs)
4 human 5601 MAPK9 mitogen-activated protein k... NM_139070.3 97.6% 97.8% (many diffs)
5 human 5601 MAPK9 mitogen-activated protein k... NM_001364611.2 92.3% 90.3% (many diffs)
6 human 5601 MAPK9 mitogen-activated protein k... NM_001364612.1 92.3% 90.3% (many diffs)
7 human 5601 MAPK9 mitogen-activated protein k... XM_005265940.5 92.3% 90.3% (many diffs)
8 human 5601 MAPK9 mitogen-activated protein k... NM_001364613.2 90% 88.2% (many diffs)
9 human 5601 MAPK9 mitogen-activated protein k... NM_001364607.2 89.3% 88.9% 1130_1134delCAGCA;1146_1147ins131
10 human 5601 MAPK9 mitogen-activated protein k... NM_139068.3 89.3% 88.9% 1130_1134delCAGCA;1146_1147ins131
11 human 5601 MAPK9 mitogen-activated protein k... XM_017009642.1 89% 88.9% 1133G>A;1134_1135ins138
12 human 5601 MAPK9 mitogen-activated protein k... NM_139069.3 87% 86.7% (many diffs)
13 human 5601 MAPK9 mitogen-activated protein k... NM_001135044.2 55.4% 54.7% (many diffs)
14 human 5601 MAPK9 mitogen-activated protein k... NM_001364610.2 55.4% 54.7% (many diffs)
15 human 5601 MAPK9 mitogen-activated protein k... NM_001308244.1 49.9% 48.1% (many diffs)
16 human 5601 MAPK9 mitogen-activated protein k... XM_017009643.1 49.9% 48.1% (many diffs)
17 human 5602 MAPK10 mitogen-activated protein k... XM_017008454.2 35.4% 41.1% (many diffs)
18 human 5602 MAPK10 mitogen-activated protein k... XM_024454149.1 35.4% 41.1% (many diffs)
19 mouse 26420 Mapk9 mitogen-activated protein k... NM_207692.2 91.1% 98.8% (many diffs)
20 mouse 26420 Mapk9 mitogen-activated protein k... NM_001163671.1 89% 96.6% (many diffs)
21 mouse 26420 Mapk9 mitogen-activated protein k... XM_017314562.2 85.6% 89.4% (many diffs)
22 mouse 26420 Mapk9 mitogen-activated protein k... XM_017314563.2 83.5% 87.3% (many diffs)
23 mouse 26420 Mapk9 mitogen-activated protein k... NM_001163672.1 81.5% 88.2% (many diffs)
24 mouse 26420 Mapk9 mitogen-activated protein k... NM_016961.3 79.5% 86% (many diffs)
25 mouse 26420 Mapk9 mitogen-activated protein k... XM_030246022.1 76% 78.8% (many diffs)
26 mouse 26420 Mapk9 mitogen-activated protein k... XM_030246023.1 73.9% 76.7% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1338
ORF length:
1272
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGAG CGACAGTAAA TGTGACAGTC AGTTTTATAG TGTGCAAGTG GCAGACTCAA
121CCTTCACTGT CCTAAAACGT TACCAGCAGC TGAAACCAAT TGGCTCTGGG GCCCAAGGGA
181TTGTTTGTGC TGCATTTGAT ACAGTTCTTG GGATAAATGT TGCAGTCAAG AAACTAAGCC
241GTCCTTTTCA GAACCAAACT CATGCAAAGA GAGCTTATCG TGAACTTGTC CTCTTAAAAT
301GTGTCAATCA TAAAAATATA ATTAGTTTGT TAAATGTGTT TACACCACAA AAAACTCTAG
361AAGAATTTCA AGATGTGTAT TTGGTTATGG AATTAATGGA TGCTAACTTA TGTCAGGTTA
421TTCACATGGA GCTGGATCAT GAAAGAATGT CCTACCTTCT TTACCAGATG CTTTGTGGTA
481TTAAACATCT GCATTCAGCT GGTATAATTC ATAGAGATTT GAAGCCTAGC AACATTGTTG
541TGAAATCAGA CTGCACCCTG AAGATCCTTG ACTTTGGCCT GGCCCGGACA GCGTGCACTA
601ACTTCATGAT GACCCCTTAC GTGGTGACAC GGTACTACCG GGCGCCCGAA GTCATCCTGG
661GTATGGGCTA CAAAGAGAAC GTTGATATCT GGTCAGTGGG TTGCATCATG GGAGAGCTGG
721TGAAAGGTTG TGTGATATTC CAAGGCACTG ACCATATTGA TCAGTGGAAT AAAGTTATTG
781AGCAGCTGGG AACACCATCA GCAGAGTTCA TGAAGAAACT TCAGCCAACT GTGAGGAATT
841ATGTCGAAAA CAGACCAAAG TATCCTGGAA TCAAATTTGA AGAACTCTTT CCAGATTGGA
901TATTCCCATC AGAATCTGAG CGAGACAAAA TAAAAACAAG TCAAGCCAGA GATCTGTTAT
961CAAAAATGTT AGTGATTGAT CCTGACAAGC GGATCTCTGT AGACGAAGCT CTGCGTCACC
1021CATACATCAC TGTTTGGTAT GACCCCGCCG AAGCAGAAGC CCCACCACCT CAAATTTATG
1081ATGCCCAGTT GGAAGAAAGA GAACATGCAA TTGAAGAATG GAAAGAGCTA ATTTACAAAG
1141AAGTCATGGA TTGGGAAGAA AGAAGCAAGA ATGGTGTTGT AAAAGATCAG CCTTCAGATG
1201CAGCAGTAAG TAGCAACGCC ACTCCTTCTC AGTCTTCATC GATCAATGAC ATTTCATCCA
1261TGTCCACTGA GCAGACGCTG GCCTCAGACA CAGACAGCAG TCTTGATGCC TCGACGGGAC
1321CCCTTGAAGG CTGTCGATGC CCAACTTTCT TGTACAAAGT tggcattata agaaagcatt
1381gcttatcaat ttgttgcaac gaac

Download FASTA (ORF) (Full)