Construct: ORF ccsbBroadEn_01402
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF013020.1_s300c1, BRDN0000395658
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- RLBP1 (6017)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 6017 | RLBP1 | retinaldehyde binding prote... | NM_000326.5 | 100% | 100% | |
| 2 | human | 6017 | RLBP1 | retinaldehyde binding prote... | XM_011521870.2 | 100% | 100% | |
| 3 | human | 6017 | RLBP1 | retinaldehyde binding prote... | XM_017022460.1 | 96.5% | 96.3% | (many diffs) |
| 4 | mouse | 19771 | Rlbp1 | retinaldehyde binding prote... | NM_001173483.1 | 86.5% | 90.5% | (many diffs) |
| 5 | mouse | 19771 | Rlbp1 | retinaldehyde binding prote... | NM_020599.2 | 86.5% | 90.5% | (many diffs) |
| 6 | mouse | 19771 | Rlbp1 | retinaldehyde binding prote... | XM_006540717.1 | 86.5% | 90.5% | (many diffs) |
| 7 | mouse | 19771 | Rlbp1 | retinaldehyde binding prote... | XM_006540718.1 | 86.5% | 90.5% | (many diffs) |
| 8 | mouse | 19771 | Rlbp1 | retinaldehyde binding prote... | XM_011250827.1 | 82.1% | 85.8% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 1017
- ORF length:
- 951
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGTC AGAAGGGGTG GGCACGTTCC GCATGGTACC TGAAGAGGAA CAGGAGCTCC 121 GTGCCCAACT GGAGCAGCTC ACAACCAAGG ACCATGGACC TGTCTTTGGC CCGTGCAGCC 181 AGCTGCCCCG CCACACCTTG CAGAAGGCCA AGGATGAGCT GAACGAGAGA GAGGAGACCC 241 GGGAGGAGGC AGTGCGAGAG CTGCAGGAGA TGGTGCAGGC GCAGGCGGCC TCGGGGGAGG 301 AGCTGGCGGT GGCCGTGGCG GAGAGGGTGC AAGAGAAGGA CAGCGGCTTC TTCCTGCGCT 361 TCATCCGCGC ACGGAAGTTC AACGTGGGCC GTGCCTATGA GCTGCTCAGA GGCTATGTGA 421 ATTTCCGGCT GCAGTACCCT GAGCTCTTTG ACAGCCTGTC CCCAGAGGCT GTCCGCTGCA 481 CCATTGAAGC TGGCTACCCT GGTGTCCTCT CTAGTCGGGA CAAGTATGGC CGAGTGGTCA 541 TGCTCTTCAA CATTGAGAAC TGGCAAAGTC AAGAAATCAC CTTTGATGAG ATCTTGCAGG 601 CATATTGCTT CATCCTGGAG AAGCTGCTGG AGAATGAGGA AACTCAAATC AATGGCTTCT 661 GCATCATTGA GAACTTCAAG GGCTTTACCA TGCAGCAGGC TGCTAGTCTC CGGACTTCAG 721 ATCTCAGGAA GATGGTGGAC ATGCTCCAGG ATTCCTTCCC AGCCCGGTTC AAAGCCATCC 781 ACTTCATCCA CCAGCCATGG TACTTCACCA CGACCTACAA TGTGGTCAAG CCCTTCTTGA 841 AGAGCAAGCT GCTTGAGAGG GTCTTTGTCC ACGGGGATGA CCTTTCTGGT TTCTACCAGG 901 AGATCGATGA GAACATCCTG CCCTCTGACT TCGGGGGCAC GCTGCCCAAG TATGATGGCA 961 AGGCCGTTGC TGAGCAGCTC TTTGGCCCCC AGGCCCAAGC TGAGAACACA GCCTTCTGCC 1021 CAACTTTCTT GTACAAAGTt ggcattataa gaaagcattg cttatcaatt tgttgcaacg 1081 aac